Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0867.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0101 + 16659185-16660546                                         28   3.6  
04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    28   4.8  
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522     27   6.3  

>06_03_0101 + 16659185-16660546
          Length = 453

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 436 RETHELIIRFIYXHGSRATVDLI*MLFLFVLLCDV 332
           R+TH L  + I   G+R T+  +  L+  +LLCDV
Sbjct: 200 RQTHHLTAKVITLRGARGTIGWV-DLWRGILLCDV 233


>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 161 SISCD----GYNIKRSTK*SPILSTSVKHVLVRCNYLCLRNV 274
           SISC      +N+KRS K   + + SV++  V C  +C + +
Sbjct: 88  SISCHLRRRAHNLKRSKKDIEVTAVSVEYEEVTCKQMCTKEI 129


>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
          Length = 766

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +2

Query: 326 DADVTKEHEQKQHLN*VNSRTRSV-XIDEADNQF---MCLSLSLALVSEC 463
           DAD   +H++++ L+ V+  T ++  +DE +N F   +C   SL L   C
Sbjct: 600 DADQEAQHQEEEELHMVDDATMTLEPMDEENNDFNNVICPCPSLELEEHC 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,811
Number of Sequences: 37544
Number of extensions: 133061
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)