Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0867.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 ITKIQLSIFLTGSYLNLFLVMVII*K-EVQNNRQYYL 221
           +T I + IF+TG + N+    VII    +Q    YYL
Sbjct: 43  LTIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 61  WICNFLYVIFIVNNQDSVSC 2
           WIC    V  +V+ Q++V C
Sbjct: 169 WICQRERVASVVHRQETVDC 188


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 426 CVSLSLWHWCPNV 464
           C +L  WH CP +
Sbjct: 467 CNTLHHWHHCPEI 479


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 111 IITKIQLSIFLTGSYLNLF 167
           +IT  QL +   G+Y+N F
Sbjct: 28  VITSQQLEVNFDGNYINNF 46


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 147 GSYLNLFLVMVII*KEVQNNRQYYLRV*NTFLFDV 251
           GS++  ++  VI  +E +   + Y     T+LFD+
Sbjct: 519 GSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDL 553


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +2

Query: 227 VKHVLVRCNYLCLRNV 274
           ++ +L+R N LC++ +
Sbjct: 262 IQQILIRMNKLCIQTI 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,451
Number of Sequences: 438
Number of extensions: 1993
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)