Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILR9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.67 
UniRef50_Q04FV9 Cluster: Putative uncharacterized protein; n=2; ...    35   0.88 
UniRef50_Q54BW4 Cluster: Ras GTPase domain-containing protein; n...    34   2.0  
UniRef50_A0UVP7 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_Q9APY1 Cluster: Paraquat-inducible protein A; n=12; Pse...    33   3.6  

>UniRef50_Q8ILR9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 4662

 Score = 35.5 bits (78), Expect = 0.67
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 489 SYLSISLTV*YSLXFTINYVVAKFHYLYQKLLYY--YIDYIIETFATIGMLSCFFFLNQ* 316
           +YL+++L + Y     I  ++  F YLY   +YY  YI YI+ T+  + + + F  + + 
Sbjct: 128 TYLNVTLNINYVFLQIIYNIILYFVYLY---IYYTKYIYYILRTYLFLLLYNSFHIIREN 184

Query: 315 CY 310
           CY
Sbjct: 185 CY 186


>UniRef50_Q04FV9 Cluster: Putative uncharacterized protein; n=2;
           Oenococcus oeni|Rep: Putative uncharacterized protein -
           Oenococcus oeni (strain BAA-331 / PSU-1)
          Length = 135

 Score = 35.1 bits (77), Expect = 0.88
 Identities = 24/83 (28%), Positives = 45/83 (54%)
 Frame = +1

Query: 145 YSQKRIHYIVAKTIGMSLRIFNMQQHKPQSLRNKVMIYFSISNS*TDSLFSTFRIITLLI 324
           + +K +  ++A  I ++LRI NM+ H P S  N ++   S+  +   ++ + ++II + I
Sbjct: 13  FFKKTVIAVIAMYIALALRIDNME-HFPISGDNVLVTKISVLIAVFVAILNAYQIICVFI 71

Query: 325 QKKKTR*HPYCSECFNNVVYIII 393
           +  +T    Y S CF +   III
Sbjct: 72  ELNQTFKIIYLSSCFLSNASIII 94


>UniRef50_Q54BW4 Cluster: Ras GTPase domain-containing protein; n=4;
            Eukaryota|Rep: Ras GTPase domain-containing protein -
            Dictyostelium discoideum AX4
          Length = 3933

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 472  SNCIIFTAIYDKLCRGKISLFIPKTTVLLYRLHY*NIRYNRDVI 341
            +NC+ F + YDKL R ++   + +TT ++ R      RYN DV+
Sbjct: 3583 NNCLYFNSYYDKLIRSQLFHSLERTTAIIAR-SLIQSRYNIDVV 3625


>UniRef50_A0UVP7 Cluster: Putative uncharacterized protein; n=1;
           Clostridium cellulolyticum H10|Rep: Putative
           uncharacterized protein - Clostridium cellulolyticum H10
          Length = 89

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 174 DYVMYSFLGIVCTLLMLFCVFFFKLNYRARLIR 76
           D ++Y  +G+V T  ++F ++F KLN    LIR
Sbjct: 6   DIILYGSIGVVSTAPLIFIIYFHKLNLLFELIR 38


>UniRef50_Q9APY1 Cluster: Paraquat-inducible protein A; n=12;
           Pseudomonadaceae|Rep: Paraquat-inducible protein A -
           Pseudomonas aeruginosa
          Length = 237

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 10/27 (37%), Positives = 22/27 (81%)
 Frame = +1

Query: 178 KTIGMSLRIFNMQQHKPQSLRNKVMIY 258
           K +G++L ++++Q+H+P S R ++M+Y
Sbjct: 140 KLVGIALLLYSVQRHQPMSARQRIMMY 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,598,974
Number of Sequences: 1657284
Number of extensions: 8138415
Number of successful extensions: 18063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18040
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)