Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    27   1.2  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    27   1.6  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    27   1.6  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   1.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   3.6  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   3.6  

>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -2

Query: 186 YCFCDYVMYSFLGIVCTLLMLFCVFFFKLNYRARLIRLDCAAPVLGASG 40
           Y   ++ ++ F  +VCTL ++F  +F++   +A  + +   A  + A G
Sbjct: 105 YGAAEWTLFGFWCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACG 153


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 186 YCFCDYVMYSFLGIVCTLLMLFCVFFFK 103
           Y   ++ ++ F  +VCTL ++F  +F++
Sbjct: 105 YGAAEWTLFGFWCLVCTLALIFLTYFYE 132


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 186 YCFCDYVMYSFLGIVCTLLMLFCVFFFK 103
           Y   ++ ++ F  +VCTL ++F  +F++
Sbjct: 105 YGAAEWTLFGFWCLVCTLALIFLTYFYE 132


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 186 YCFCDYVMYSFLGIVCTLLMLFCVFFFK 103
           Y   ++ ++ F  +VCTL ++F  +F++
Sbjct: 105 YGAAEWTLFGFWCLVCTLALIFLTYFYE 132


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 181 FLRLCNVFFFGNSVHIINVVLCFFF*IKLSRSIDS 77
           FL+ C  +    S+   N+ LC+F+   L + +DS
Sbjct: 340 FLKNCGYYELAWSIFQANMELCYFYPRYLEKKLDS 374


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 186 YCFCDYVMYSFLGIVCTLLMLFCVFFFK 103
           Y   ++ ++ F   VCTL ++F  +F++
Sbjct: 105 YGAVEWTLFGFWCFVCTLALIFLTYFYE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,995
Number of Sequences: 5004
Number of extensions: 38262
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)