BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0866.Seq (499 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 27 8.4 >06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343, 8332461-8332619,8333246-8333372,8333444-8333775, 8333859-8334593,8334735-8335073,8335160-8335313, 8335405-8336154,8336242-8336372 Length = 1565 Score = 27.1 bits (57), Expect = 8.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 10 RSVYLSRPEAPGRTEHWRGAIQANQSSAI 96 R V S+ E PG E+W +++ QSS++ Sbjct: 977 RFVEKSKVEIPGTHENWENSLEHTQSSSL 1005 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,970,554 Number of Sequences: 37544 Number of extensions: 188372 Number of successful extensions: 309 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 309 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1047416480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -