Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    27   8.4  

>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
            8332461-8332619,8333246-8333372,8333444-8333775,
            8333859-8334593,8334735-8335073,8335160-8335313,
            8335405-8336154,8336242-8336372
          Length = 1565

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 10   RSVYLSRPEAPGRTEHWRGAIQANQSSAI 96
            R V  S+ E PG  E+W  +++  QSS++
Sbjct: 977  RFVEKSKVEIPGTHENWENSLEHTQSSSL 1005


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,554
Number of Sequences: 37544
Number of extensions: 188372
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)