Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.7  
SB_49704| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.5  
SB_19715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 255 NHHFVS*TLWFVLLHIKYSK*HPYC---FCDYVMYSFLGIVCTLLML 124
           +HH    T++ ++ H+ +     YC   FC Y+ Y     +CT+ +L
Sbjct: 788 HHHSAIITIYIIVNHLCHFSVGCYCCRPFCRYLFYCLASSMCTIPLL 834


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 414 YLYQKLLY--YYIDYIIETFATIGMLSCFFFLNQ*CYDT 304
           YLY   L    Y++Y++ T  +I  L   +FL Q C+DT
Sbjct: 794 YLYITALAGNLYVNYLVMTLLSIPHLPISWFLMQRCFDT 832


>SB_49704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 71  SKRINRAR*FNLKKKTQNNINNVHTI 148
           SKRI   R FN ++ T + +N VH++
Sbjct: 4   SKRILPVREFNTRRYTSDEVNKVHSV 29


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 226  VCAVAY*IF*V-TSLLFLRLCNVFFFGNSVHIINVVLCFFF*IKLSRSIDSLGL 68
            +C  A  IF V  SL +L LC +  F  SV +  + LC F    LS S+  L L
Sbjct: 1933 LCLCAICIFAVFVSLRYLYLCGIRIFALSVSLRFLYLCAFCIFALSVSLRYLYL 1986


>SB_19715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 38  HPDAPSTGAAQSKRINRAR*FNLKKKTQN---NINNVHTIPKKE 160
           HPD  S  A ++    RAR  NL+ +  N   +     T+ KKE
Sbjct: 56  HPDLRSASAPRTTTATRARRMNLRSRLNNPKKSRGEAKTVSKKE 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,952
Number of Sequences: 59808
Number of extensions: 258688
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)