Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    29   1.9  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U39646-9|AAA80373.1|   59|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    28   4.3  
Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -1

Query: 490 LLFIN*SNCIIFTAIYDKLCRGKISLFIPKTTVLLYRLHY*NIRYNRDVILFFFFESIML 311
           +L  N   C++ T IY  LC   I  F   T++ LY+     I   + VIL FF  +  +
Sbjct: 201 ILVHNAVTCVLTTGIYFYLCYYLIFKFGYSTSMWLYKSKRQIIA--QGVILSFFHAATAI 258

Query: 310 *YEM*KIMNP 281
            YE    +NP
Sbjct: 259 IYEYILFVNP 268


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 174 DYVMYSFLGIVCTLLMLFCVF 112
           +Y +YS +GI+ +LL+LF VF
Sbjct: 152 NYNLYSLIGIIISLLVLFTVF 172


>Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC455.9 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 459 YSLXFTINYVVAKFHYLYQKLLYYYIDYIIETFATIGMLSCFFFL 325
           YS+  +I YV     YL    L++Y    + T  +  +LS  FFL
Sbjct: 58  YSIAVSIYYVALDISYLSPFFLFHYKILFVVTLLSSNILSTRFFL 102


>U39646-9|AAA80373.1|   59|Caenorhabditis elegans Hypothetical
           protein F47B7.1 protein.
          Length = 59

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -1

Query: 184 LFLRLCNVFFFGN--SVHI-INVVLCFFF 107
           +FL    +F  GN  ++H+ +N++LCFFF
Sbjct: 15  IFLPPLAIFIHGNDCNMHVAVNIILCFFF 43


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 472 SNCIIFTAIYDKLCRGKISLFIPKTTVLLYRLH 374
           S CII+      +    I + IPKT  + YRLH
Sbjct: 258 SMCIIYLLFNRTIRNSVIKIIIPKTIRIRYRLH 290


>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 63  RRNPSESIERDNLIXXXXXXTTLIMCTLFPKKNTLHSRKNNRDVT 197
           R NPS S+            TT ++    PKK +  SR+N   +T
Sbjct: 428 RANPSPSMSDLRTTKSMAGSTTSLLSERAPKKRSTSSRRNQEPIT 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,118
Number of Sequences: 27780
Number of extensions: 209394
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)