Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0866.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (...    28   4.0  
At3g29350.2 68416.m03686 two-component phosphorelay mediator 1 (...    27   5.3  
At3g29350.1 68416.m03685 two-component phosphorelay mediator 1 (...    27   5.3  
At5g23070.1 68418.m02697 thymidine kinase, putative similar to t...    27   9.3  

>At5g39340.1 68418.m04764 two-component phosphorelay mediator 2
           (HP2) nearly identical to ATHP2 [Arabidopsis thaliana]
           GI:4156243
          Length = 155

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8
           +L  S  S+G +R    CV + + C S+ YE
Sbjct: 83  QLKGSSSSVGAKRVKGLCVTLKECCDSQNYE 113


>At3g29350.2 68416.m03686 two-component phosphorelay mediator 1
           (HP1) identical to ATHP1 [Arabidopsis thaliana]
           GI:4156241
          Length = 114

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8
           +L  S  S+G +R    CV   + C +K YE
Sbjct: 83  QLKGSSSSVGAKRVKTLCVSFKECCEAKNYE 113


>At3g29350.1 68416.m03685 two-component phosphorelay mediator 1
           (HP1) identical to ATHP1 [Arabidopsis thaliana]
           GI:4156241
          Length = 156

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8
           +L  S  S+G +R    CV   + C +K YE
Sbjct: 83  QLKGSSSSVGAKRVKTLCVSFKECCEAKNYE 113


>At5g23070.1 68418.m02697 thymidine kinase, putative similar to
           thymidine kinase [Oryza sativa] SWISS-PROT:O81263
          Length = 282

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 184 IGMSLRIFNMQQHKPQSLRNKVMIYFSISN-S*TDSLFSTFRIITLLIQKKKTR 342
           I  SL  F++  HKP      +   FSI+N + T+S  ST  I T  +Q K TR
Sbjct: 10  ISPSLAPFSLHLHKPSLFSTALRFSFSINNITPTNSPPST--ISTRKLQTKATR 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,491,879
Number of Sequences: 28952
Number of extensions: 174106
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)