BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0866.Seq (499 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (... 28 4.0 At3g29350.2 68416.m03686 two-component phosphorelay mediator 1 (... 27 5.3 At3g29350.1 68416.m03685 two-component phosphorelay mediator 1 (... 27 5.3 At5g23070.1 68418.m02697 thymidine kinase, putative similar to t... 27 9.3 >At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (HP2) nearly identical to ATHP2 [Arabidopsis thaliana] GI:4156243 Length = 155 Score = 27.9 bits (59), Expect = 4.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -1 Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8 +L S S+G +R CV + + C S+ YE Sbjct: 83 QLKGSSSSVGAKRVKGLCVTLKECCDSQNYE 113 >At3g29350.2 68416.m03686 two-component phosphorelay mediator 1 (HP1) identical to ATHP1 [Arabidopsis thaliana] GI:4156241 Length = 114 Score = 27.5 bits (58), Expect = 5.3 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -1 Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8 +L S S+G +R CV + C +K YE Sbjct: 83 QLKGSSSSVGAKRVKTLCVSFKECCEAKNYE 113 >At3g29350.1 68416.m03685 two-component phosphorelay mediator 1 (HP1) identical to ATHP1 [Arabidopsis thaliana] GI:4156241 Length = 156 Score = 27.5 bits (58), Expect = 5.3 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -1 Query: 100 KLSRSIDSLGLRRASARCVRVPQVCSSKRYE 8 +L S S+G +R CV + C +K YE Sbjct: 83 QLKGSSSSVGAKRVKTLCVSFKECCEAKNYE 113 >At5g23070.1 68418.m02697 thymidine kinase, putative similar to thymidine kinase [Oryza sativa] SWISS-PROT:O81263 Length = 282 Score = 26.6 bits (56), Expect = 9.3 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +1 Query: 184 IGMSLRIFNMQQHKPQSLRNKVMIYFSISN-S*TDSLFSTFRIITLLIQKKKTR 342 I SL F++ HKP + FSI+N + T+S ST I T +Q K TR Sbjct: 10 ISPSLAPFSLHLHKPSLFSTALRFSFSINNITPTNSPPST--ISTRKLQTKATR 61 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,491,879 Number of Sequences: 28952 Number of extensions: 174106 Number of successful extensions: 272 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 272 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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