BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0865.Seq (499 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 1.7 At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 28 4.0 >At5g12400.1 68418.m01458 PHD finger transcription factor, putative similarity to predicted proteins, Arabidopsis thaliana Length = 1595 Score = 29.1 bits (62), Expect = 1.7 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 28 DTTSDGCCKCRIDSKILC 81 D SD CC C++D +LC Sbjct: 605 DRNSDDCCFCKMDGSLLC 622 >At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) family protein zinc finger protein, Arabidopsis thaliana, gb:L76926 Length = 225 Score = 27.9 bits (59), Expect = 4.0 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +1 Query: 34 TSDGCCKCRIDSK 72 TSDGCC CR+ K Sbjct: 212 TSDGCCSCRLGEK 224 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,648,152 Number of Sequences: 28952 Number of extensions: 55713 Number of successful extensions: 109 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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