Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0865.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    29   1.7  
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa...    28   4.0  

>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 28  DTTSDGCCKCRIDSKILC 81
           D  SD CC C++D  +LC
Sbjct: 605 DRNSDDCCFCKMDGSLLC 622


>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
           family protein zinc finger protein, Arabidopsis
           thaliana, gb:L76926
          Length = 225

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 34  TSDGCCKCRIDSK 72
           TSDGCC CR+  K
Sbjct: 212 TSDGCCSCRLGEK 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,648,152
Number of Sequences: 28952
Number of extensions: 55713
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)