Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   6.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    24   8.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   8.1  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 290 FRSSCLXRWRYGTEXTHLLVSFWFSLIAISFSVTL 186
           +R +CL R+ +G +   LLV F FS++ I   + L
Sbjct: 149 WRHTCL-RYPFGMQQMELLVDFSFSILLIFLGMNL 182


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 79  TSRLLKLMEAVHTKELIIISDDA*QHGTVKALLRNFRVTE--KEMAIKENQ 225
           T   L LM  VH  ++  I D   +H  +   +RN  +TE  K+ ++ +NQ
Sbjct: 179 TMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ 229


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 239 LLVSFWFSLIAISFSVTLKFLSNALTVPCCYASSLIII 126
           LL+ F+F L  +SFS +  FL     +   Y SS  I+
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPIL 153


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 264 ALWDRVNTFVSIVL 223
           ALWDR+NT +S  +
Sbjct: 384 ALWDRLNTIISTTM 397


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 85  RLLKLMEAVHTKELIIISDDA*QHG-TVKALLRNFRVTEKEMAIKENQND 231
           ++L L+E    +E   IS    ++  TVK L R  R++E EMA+KE +++
Sbjct: 323 KILDLLEMKQQEENDRISHIEYENDLTVKKLKR--RISELEMAVKEYESE 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,250
Number of Sequences: 5004
Number of extensions: 20838
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)