BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0814.Seq (415 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493... 28 2.6 12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 28 3.4 05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 27 5.9 03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 27 5.9 >11_06_0124 + 20348269-20348413,20348753-20348874,20349210-20349318, 20349401-20349440,20350245-20350334,20350388-20350547, 20350656-20350795,20351390-20351492,20351667-20352178, 20352267-20352543 Length = 565 Score = 28.3 bits (60), Expect = 2.6 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -3 Query: 287 RSSCLXRWRYGTEXTHLLVSFWFSLIAISFSVTLKFLSNALTVP 156 +S CL + R G E + LVS+ FSL+ + ++ + +L + VP Sbjct: 152 QSGCLKKVRVGEEIS--LVSWIFSLMDVVTNICIHYLEERVKVP 193 >12_02_1015 + 25331667-25332169,25333305-25333406,25333775-25333919, 25334002-25334186,25334297-25334401,25334507-25334604, 25334686-25334924,25335030-25335123,25335190-25335275, 25335579-25335677,25335804-25335869 Length = 573 Score = 27.9 bits (59), Expect = 3.4 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 197 SVTLKFLSNALTVPCCYASSLIIISSFVCTASI-SFKSLDVRGLCML 60 S L L ++L C +L I S +C ++ S +S ++RGLCML Sbjct: 271 STDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCML 317 >05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347, 3615562-3615657,3615790-3615829,3616729-3616856 Length = 338 Score = 27.1 bits (57), Expect = 5.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 159 HGQGIAEKLQSDRKRNGYQREPKRY 233 HG E+L S R GY R P+R+ Sbjct: 184 HGADREERLHSRRDGRGYSRSPRRH 208 >03_06_0222 + 32466379-32466741,32466849-32466948,32467443-32467547, 32467627-32467789,32467995-32468115,32468625-32468705, 32468813-32468911,32468955-32468986,32468987-32469137, 32469477-32469563,32470290-32470409,32470514-32470645, 32470743-32470840,32470919-32471042,32471126-32471233, 32471822-32471957,32472751-32472861,32472963-32473026, 32473133-32473205,32473762-32473938,32474012-32474122, 32474189-32474449,32474811-32474981,32475073-32475228, 32475590-32475823,32475936-32476103,32476316-32476425, 32476513-32477041 Length = 1394 Score = 27.1 bits (57), Expect = 5.9 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = -3 Query: 266 WRYGTEXTHLLVSFWFSLIAISFSVTLKFLSNALTVPCCYASSLIIISSFV 114 W Y + H V W+ ++ I F V +K L L V C SL S F+ Sbjct: 538 WSYINDHVHFNVGRWYGVLGI-FDVAIKHL---LEVIACSHQSLTTQSMFL 584 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,073,131 Number of Sequences: 37544 Number of extensions: 120520 Number of successful extensions: 242 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 242 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 742607976 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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