Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493...    28   2.6  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    28   3.4  
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361...    27   5.9  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    27   5.9  

>11_06_0124 +
           20348269-20348413,20348753-20348874,20349210-20349318,
           20349401-20349440,20350245-20350334,20350388-20350547,
           20350656-20350795,20351390-20351492,20351667-20352178,
           20352267-20352543
          Length = 565

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 287 RSSCLXRWRYGTEXTHLLVSFWFSLIAISFSVTLKFLSNALTVP 156
           +S CL + R G E +  LVS+ FSL+ +  ++ + +L   + VP
Sbjct: 152 QSGCLKKVRVGEEIS--LVSWIFSLMDVVTNICIHYLEERVKVP 193


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 197 SVTLKFLSNALTVPCCYASSLIIISSFVCTASI-SFKSLDVRGLCML 60
           S  L  L ++L   C    +L I S  +C  ++ S +S ++RGLCML
Sbjct: 271 STDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCML 317


>05_01_0455 -
           3614011-3614503,3615007-3615072,3615154-3615347,
           3615562-3615657,3615790-3615829,3616729-3616856
          Length = 338

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 159 HGQGIAEKLQSDRKRNGYQREPKRY 233
           HG    E+L S R   GY R P+R+
Sbjct: 184 HGADREERLHSRRDGRGYSRSPRRH 208


>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 266 WRYGTEXTHLLVSFWFSLIAISFSVTLKFLSNALTVPCCYASSLIIISSFV 114
           W Y  +  H  V  W+ ++ I F V +K L   L V  C   SL   S F+
Sbjct: 538 WSYINDHVHFNVGRWYGVLGI-FDVAIKHL---LEVIACSHQSLTTQSMFL 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,131
Number of Sequences: 37544
Number of extensions: 120520
Number of successful extensions: 242
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)