BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0814.Seq (415 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87 SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5 SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5 SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2) 27 6.1 SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6) 27 8.1 >SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2656 Score = 29.9 bits (64), Expect = 0.87 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = -3 Query: 203 SFSVTLKFLSNALTVPCCYASSLIIISSFVCTASISFKSLDVRGLCMLXYAICL 42 + SV+L+FL L C +A S+ + ++C I S+ +R +C+ YAIC+ Sbjct: 1959 ALSVSLRFLY--LCAFCIFALSVSLRYLYLCAICIFALSVSLRYICL--YAICI 2008 >SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 117 Score = 28.7 bits (61), Expect = 2.0 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +1 Query: 157 GTVKALLRNFRVTEKEMAIKENQNDTNKCVXSVP*RQRXKQLERNQLAKRRK 312 G+ K LL+ RV + N+N TN+C + P +Q+ +Q +N + K Sbjct: 67 GSNKYLLKYRRVYTSRCQVP-NENSTNQCQENPPTKQQRQQQNKNSRPEGHK 117 >SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1562 Score = 27.9 bits (59), Expect = 3.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 159 AVLLCVVTDYYKFFCMYSFH*FQEPRC 79 A++LCV Y + C Y+ H PRC Sbjct: 520 AIILCVYVYAYIYACAYAQHGKMPPRC 546 >SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 605 Score = 27.9 bits (59), Expect = 3.5 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +1 Query: 175 LRNFRVTEKE--MAIKENQNDTNKCVXSVP*RQRXKQLERNQLAKRRK 312 ++ F+ EKE +A K+ + D K RQR + LE +LAK ++ Sbjct: 252 IKKFKEEEKERKLAEKKAKEDAAKAAAEEKERQRQEALEAERLAKEKE 299 >SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2) Length = 545 Score = 27.1 bits (57), Expect = 6.1 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 249 VNTFVSIVLVLFDSHFFFGHSE-VSQQCLDRAVLLCVVTDYYKFFCMY 109 + +S++++++ +H F V L R+V C++ DY+ C++ Sbjct: 251 ITIIISLIIIIYVTHIIFNIIIIVINVTLHRSVSYCLLCDYFSPECIH 298 >SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6) Length = 416 Score = 26.6 bits (56), Expect = 8.1 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = -3 Query: 227 FWFSLIAISFSVTLKFLSNALTVPCCYASSLIII 126 +W I FSV +++ A++VPC Y + + + Sbjct: 3 YWNLYINRGFSVPCPYVNRAVSVPCPYVNRAVSV 36 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,944,514 Number of Sequences: 59808 Number of extensions: 161130 Number of successful extensions: 318 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 318 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 764823134 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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