Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.87 
SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.5  
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    27   6.1  
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   27   8.1  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -3

Query: 203  SFSVTLKFLSNALTVPCCYASSLIIISSFVCTASISFKSLDVRGLCMLXYAICL 42
            + SV+L+FL   L   C +A S+ +   ++C   I   S+ +R +C+  YAIC+
Sbjct: 1959 ALSVSLRFLY--LCAFCIFALSVSLRYLYLCAICIFALSVSLRYICL--YAICI 2008


>SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 157 GTVKALLRNFRVTEKEMAIKENQNDTNKCVXSVP*RQRXKQLERNQLAKRRK 312
           G+ K LL+  RV      +  N+N TN+C  + P +Q+ +Q  +N   +  K
Sbjct: 67  GSNKYLLKYRRVYTSRCQVP-NENSTNQCQENPPTKQQRQQQNKNSRPEGHK 117


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 159 AVLLCVVTDYYKFFCMYSFH*FQEPRC 79
           A++LCV    Y + C Y+ H    PRC
Sbjct: 520 AIILCVYVYAYIYACAYAQHGKMPPRC 546


>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 175 LRNFRVTEKE--MAIKENQNDTNKCVXSVP*RQRXKQLERNQLAKRRK 312
           ++ F+  EKE  +A K+ + D  K       RQR + LE  +LAK ++
Sbjct: 252 IKKFKEEEKERKLAEKKAKEDAAKAAAEEKERQRQEALEAERLAKEKE 299


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 249 VNTFVSIVLVLFDSHFFFGHSE-VSQQCLDRAVLLCVVTDYYKFFCMY 109
           +   +S++++++ +H  F     V    L R+V  C++ DY+   C++
Sbjct: 251 ITIIISLIIIIYVTHIIFNIIIIVINVTLHRSVSYCLLCDYFSPECIH 298


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 227 FWFSLIAISFSVTLKFLSNALTVPCCYASSLIII 126
           +W   I   FSV   +++ A++VPC Y +  + +
Sbjct: 3   YWNLYINRGFSVPCPYVNRAVSVPCPYVNRAVSV 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,514
Number of Sequences: 59808
Number of extensions: 161130
Number of successful extensions: 318
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)