Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    24   2.5  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    24   2.5  
AY187041-1|AAO39755.1|  272|Anopheles gambiae putative antennal ...    23   3.3  

>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SVNVSQNNTYKQMAXISIHRPLTSRLLKLM 102
           S N   NN Y+ +  +SI   LTS L  L+
Sbjct: 344 SYNRFHNNVYRDVTIVSIMDTLTSMLAGLI 373


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SVNVSQNNTYKQMAXISIHRPLTSRLLKLM 102
           S N   NN Y+ +  +SI   LTS L  L+
Sbjct: 344 SYNRFHNNVYRDVTIVSIMDTLTSMLAGLI 373


>AY187041-1|AAO39755.1|  272|Anopheles gambiae putative antennal
           carrier protein TOL-1 protein.
          Length = 272

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 413 LXVINLXVHXDCWFDP 366
           + VI L  H  CWF+P
Sbjct: 150 ILVIPLNGHGKCWFEP 165


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,889
Number of Sequences: 2352
Number of extensions: 5505
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 33777477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)