BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0814.Seq (415 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC128584-1|AAI28585.1| 974|Homo sapiens PITPNM family member 3 ... 31 1.1 BC128583-1|AAI28584.1| 974|Homo sapiens PITPNM family member 3 ... 31 1.1 AL389994-1|CAB97544.1| 912|Homo sapiens hypothetical protein, s... 31 1.1 AF334586-1|AAK01446.1| 974|Homo sapiens NIR1 protein. 31 1.1 AB209130-1|BAD92367.1| 879|Homo sapiens Hypothetical protein pr... 31 1.1 X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila re... 29 4.6 BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein. 29 4.6 AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol tr... 29 4.6 AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein. 29 4.6 >BC128584-1|AAI28585.1| 974|Homo sapiens PITPNM family member 3 protein. Length = 974 Score = 31.5 bits (68), Expect = 1.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KWL KRT+ L NV T +H A+D Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640 >BC128583-1|AAI28584.1| 974|Homo sapiens PITPNM family member 3 protein. Length = 974 Score = 31.5 bits (68), Expect = 1.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KWL KRT+ L NV T +H A+D Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640 >AL389994-1|CAB97544.1| 912|Homo sapiens hypothetical protein, similar to (AF058693) M-RdgB2 retinal degeneration protei protein. Length = 912 Score = 31.5 bits (68), Expect = 1.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KWL KRT+ L NV T +H A+D Sbjct: 574 PREKWLRKRTQVKLRNV-TANHRAND 598 >AF334586-1|AAK01446.1| 974|Homo sapiens NIR1 protein. Length = 974 Score = 31.5 bits (68), Expect = 1.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KWL KRT+ L NV T +H A+D Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640 >AB209130-1|BAD92367.1| 879|Homo sapiens Hypothetical protein protein. Length = 879 Score = 31.5 bits (68), Expect = 1.1 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KWL KRT+ L NV T +H A+D Sbjct: 541 PREKWLRKRTQVKLRNV-TANHRAND 565 >X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila retinal degeneration B gene protein. Length = 1244 Score = 29.5 bits (63), Expect = 4.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KW KRT+ + NV T +H ASD Sbjct: 900 PREKWQRKRTQVKIRNV-TSNHRASD 924 >BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein. Length = 1243 Score = 29.5 bits (63), Expect = 4.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KW KRT+ + NV T +H ASD Sbjct: 899 PREKWQRKRTQVKIRNV-TSNHRASD 923 >AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol transfer protein membrane-associated 1 protein. Length = 1243 Score = 29.5 bits (63), Expect = 4.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KW KRT+ + NV T +H ASD Sbjct: 899 PREKWQRKRTQVKIRNV-TSNHRASD 923 >AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein. Length = 1244 Score = 29.5 bits (63), Expect = 4.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +2 Query: 194 PKKKWLSKRTKTILTNVXTRSHNASD 271 P++KW KRT+ + NV T +H ASD Sbjct: 900 PREKWQRKRTQVKIRNV-TSNHRASD 924 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 43,405,292 Number of Sequences: 237096 Number of extensions: 676980 Number of successful extensions: 1282 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1281 length of database: 76,859,062 effective HSP length: 83 effective length of database: 57,180,094 effective search space used: 3087725076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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