Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z83218-1|CAB05686.1|  282|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -3

Query: 335 LTCCIQEGFLRFAN*FRSSCLXRWRYGTEXTHLLVSFWFSLIAISFSVTLKFLSNALTVP 156
           +TCCI   F+      +S CL   +  T   H       SL   +FS+   +LSNA+ V 
Sbjct: 218 MTCCIITNFILLLLLIKSRCLLNAQ--TRSMH-SYKVEVSLSLTTFSMIFSYLSNAMIVI 274

Query: 155 CCY 147
           C +
Sbjct: 275 CSF 277


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 108 CTYKRTYNNQ*RRITTRH---GQGIAEKLQSDRKRNGYQREPKRY*QM 242
           C +K T+N +   I  +    G+  AEK +  +K  GY R PK   +M
Sbjct: 116 CDFKLTFNKETGEIEVKEAVEGEEDAEKKKKKKKIFGYNRIPKALTEM 163


>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 91  LKLMEAVHTKELIIISDDA*QHG--TVKALLRNFRVTEKEMAIKENQNDTNKCVXSVP*R 264
           L ++E  + K++ I+     +H   T+K L   F++ + +  ++ ++ D      S+P  
Sbjct: 200 LNVLEGANVKDIKILGRRGPEHVSFTIKELREQFKIKDWDSKLEISEIDAKNLTESLPKL 259

Query: 265 QRXKQLERNQLAK 303
           +R K+     L K
Sbjct: 260 ERKKKRLTEVLVK 272


>Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical
           protein F45G2.10 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 91  LKLMEAVHTKELIIISDDA*QHGTVKALLRNFRVTEKEMAIKENQ---NDTNKCV 246
           +KL+ ++H K  + +S     H T +++ R     E+  A  ENQ   +  N+C+
Sbjct: 102 VKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156


>AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical
           protein F38A1.10 protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 140 SLIIISSFVCTASISFKSLDVRGLC 66
           SL++  S+ C+  +    +D++GLC
Sbjct: 7   SLVLCVSYACSTCLDSGDIDIKGLC 31


>Z83218-1|CAB05686.1|  282|Caenorhabditis elegans Hypothetical
           protein C31A11.4 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 240 FVSIVLVLFDSHFFFGHSE-VSQQCLDRAVLLCVVTDYY 127
           F+ I+L+LFD +  FG  + V    LD    LC +   Y
Sbjct: 129 FLIILLILFDQYMLFGFCDVVIDTPLDCYNFLCTMNQCY 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,263,796
Number of Sequences: 27780
Number of extensions: 118397
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)