Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0814.Seq
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43180.1 68418.m05272 expressed protein contains Pfam profile...    27   5.0  
At1g15600.1 68414.m01875 hypothetical protein                          27   5.0  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    26   8.7  

>At5g43180.1 68418.m05272 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 239

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 263 RYGTEXTHLLVSFWFSLIAISFSVTLKFLSNAL 165
           +Y +    L  SF+FS IA+S+ +   FL NA+
Sbjct: 122 KYASASLLLAASFFFSSIALSYLMDAIFLINAI 154


>At1g15600.1 68414.m01875 hypothetical protein
          Length = 220

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -3

Query: 227 FWFSLIAISFSVTLKFLSNALTVPCCYASSLIIISSFVCTASISFKSLDVRGLCMLXYAI 48
           FW  L  ++FS     L N      CY + L++++  V    ++ + L     C++   I
Sbjct: 161 FWLCLALLTFSCIRYVLFNLTLAMVCYTTPLLLLTPVVICVLLAVEVLKGIVACIVS-CI 219

Query: 47  C 45
           C
Sbjct: 220 C 220


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 136 SDDA*QHGTVKALLRNFRVTEKEMAIKENQNDT 234
           +D+A ++ + K ++R+     KEMA K++Q D+
Sbjct: 882 ADEAEENRSAKEVIRSLTTQLKEMAEKQSQKDS 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,732,124
Number of Sequences: 28952
Number of extensions: 105174
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)