BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0804.Seq (398 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 27 0.81 SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 4.3 SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.7 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 7.6 >SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 288 Score = 27.5 bits (58), Expect = 0.81 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 198 YFVGFQN-SXVMINRDNWGHSYCXVRGEIL 112 Y VG+ N + ++++ WGHS+ V E+L Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171 >SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 25.0 bits (52), Expect = 4.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 214 NMISVLFCWFSELXGND 164 N +S+L C FS L GND Sbjct: 476 NQLSLLKCTFSNLDGND 492 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 24.6 bits (51), Expect = 5.7 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +1 Query: 139 RMP-PVIPINHYLGVLKTNKIEPRSYSIIPCTEIFK 243 R+P PVIP Y +L+ KIE I E+ K Sbjct: 858 RLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMK 893 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 24.2 bits (50), Expect = 7.6 Identities = 6/20 (30%), Positives = 17/20 (85%) Frame = +1 Query: 103 RRSKNFTSNVAIRMPPVIPI 162 + SK++ +N ++++PP++P+ Sbjct: 558 KTSKSYKTNDSLKVPPLVPL 577 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,219,385 Number of Sequences: 5004 Number of extensions: 19422 Number of successful extensions: 48 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 48 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 134126124 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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