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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0804.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-06
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   2e-06
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   2e-06
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-06
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   9e-06
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   2e-04
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.012
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.016
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.049
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.26 
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    27   4.3  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   5.6  
SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)                     26   9.8  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/38 (71%), Positives = 28/38 (73%)
 Frame = -2

Query: 115 SWIVARRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           SWI  RRT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = -2

Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           RRT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = -2

Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           RRT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = -2

Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           RRT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = -2

Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           RRT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 23/32 (71%), Positives = 24/32 (75%)
 Frame = -2

Query: 97  RTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           RT+AKAFA  VFINQER  E RRR DT  VLT
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = -2

Query: 97 RTSAKAFAXGVFINQERNXEVRRRLDT 17
          RT+AKAFA  VFINQER  E RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           R+T+  ++ A  VFINQER  E RRR DT  VLT
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
           VKFLD RKTN  ESI    F     K
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERK 27


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 16/26 (61%), Positives = 16/26 (61%)
 Frame = -1

Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
           VKFLD RKTN  ESIC  CF     K
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERK 27



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -2

Query: 64 FINQERNXEVRRRLDTAXVLT 2
          FINQER  E RRR DT  VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 16/26 (61%), Positives = 16/26 (61%)
 Frame = -1

Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
           VKFLD RKTN  ESIC  CF     K
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERK 27



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -2

Query: 64 FINQERNXEVRRRLDTAXVLT 2
          FINQER  E RRR DT  VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2
           R+T+  ++    VFINQER  E RRR DT  VLT
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -1

Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
           VKFLD RKTN  ESIC   F     K
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERK 27


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -2

Query: 64 FINQERNXEVRRRLDTAXVLT 2
          FINQER  E RRR DT  VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 119 KFLDRRKTNISESICXXCFHQSRTK 45
           + L  RKTN  ESIC  CF     K
Sbjct: 3   EILGFRKTNYCESICQECFINQERK 27


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 97  VLRRSKNFTSNVAIRMPPVIPINHYLGVLKT--NK-IEPRSYSII-PCTEIFKQH 249
           V +R  N      I +P ++   H+L ++KT  NK +E   Y II P  EI  +H
Sbjct: 589 VSKRLANTNHPAMITVPDMVAAKHWLKLIKTEHNKEVENMKYQIIQPTLEINPKH 643


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 104 DDPRISPLTXQYEC 145
           DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254


>SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)
          Length = 848

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 342 ISKSYRGALRXVSRWXDNFTLXKLECSKRVKML 244
           ++K  +   R + R+ +  T+ K +C KR+K+L
Sbjct: 328 LNKDAQLRTRNLKRYINQCTVAKAQCEKRIKLL 360


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 183 QNSXVMINRDNWGHSY-CXVRGEILGSSQDEHQRKHLP 73
           Q   V  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,930,010
Number of Sequences: 59808
Number of extensions: 136730
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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