BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0804.Seq (398 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 2e-08 SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06 SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06 SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06 SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06 SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06 SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04 SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012 SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016 SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016 SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.049 SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26 SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 27 4.3 SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 5.6 SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16) 26 9.8 SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8 >SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 55.2 bits (127), Expect = 2e-08 Identities = 27/38 (71%), Positives = 28/38 (73%) Frame = -2 Query: 115 SWIVARRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 SWI RRT+AKAFA VFINQER E RRR DT VLT Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41 >SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 48.4 bits (110), Expect = 2e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -2 Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 RRT+AKAFA VFINQER E RRR DT VLT Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41 >SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 48.4 bits (110), Expect = 2e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -2 Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 RRT+AKAFA VFINQER E RRR DT VLT Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41 >SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 48.4 bits (110), Expect = 2e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -2 Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 RRT+AKAFA VFINQER E RRR DT VLT Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41 >SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 48 Score = 48.4 bits (110), Expect = 2e-06 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -2 Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 RRT+AKAFA VFINQER E RRR DT VLT Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43 >SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 65 Score = 46.4 bits (105), Expect = 9e-06 Identities = 23/32 (71%), Positives = 24/32 (75%) Frame = -2 Query: 97 RTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2 RT+AKAFA VFINQER E RRR DT VLT Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60 >SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 99 Score = 41.5 bits (93), Expect = 2e-04 Identities = 20/27 (74%), Positives = 21/27 (77%) Frame = -2 Query: 97 RTSAKAFAXGVFINQERNXEVRRRLDT 17 RT+AKAFA VFINQER E RRR DT Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28 >SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 35.9 bits (79), Expect = 0.012 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -2 Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2 R+T+ ++ A VFINQER E RRR DT VLT Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41 Score = 27.9 bits (59), Expect = 3.2 Identities = 14/26 (53%), Positives = 14/26 (53%) Frame = -1 Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45 VKFLD RKTN ESI F K Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERK 27 >SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 35.5 bits (78), Expect = 0.016 Identities = 16/26 (61%), Positives = 16/26 (61%) Frame = -1 Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45 VKFLD RKTN ESIC CF K Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27 Score = 31.5 bits (68), Expect = 0.26 Identities = 15/21 (71%), Positives = 15/21 (71%) Frame = -2 Query: 64 FINQERNXEVRRRLDTAXVLT 2 FINQER E RRR DT VLT Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41 >SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 35.5 bits (78), Expect = 0.016 Identities = 16/26 (61%), Positives = 16/26 (61%) Frame = -1 Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45 VKFLD RKTN ESIC CF K Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27 Score = 31.5 bits (68), Expect = 0.26 Identities = 15/21 (71%), Positives = 15/21 (71%) Frame = -2 Query: 64 FINQERNXEVRRRLDTAXVLT 2 FINQER E RRR DT VLT Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41 >SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 33.9 bits (74), Expect = 0.049 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -2 Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2 R+T+ ++ VFINQER E RRR DT VLT Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41 Score = 31.5 bits (68), Expect = 0.26 Identities = 15/26 (57%), Positives = 15/26 (57%) Frame = -1 Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45 VKFLD RKTN ESIC F K Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERK 27 >SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 46 Score = 31.5 bits (68), Expect = 0.26 Identities = 15/21 (71%), Positives = 15/21 (71%) Frame = -2 Query: 64 FINQERNXEVRRRLDTAXVLT 2 FINQER E RRR DT VLT Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41 Score = 26.6 bits (56), Expect = 7.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -1 Query: 119 KFLDRRKTNISESICXXCFHQSRTK 45 + L RKTN ESIC CF K Sbjct: 3 EILGFRKTNYCESICQECFINQERK 27 >SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) Length = 739 Score = 27.5 bits (58), Expect = 4.3 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1 Query: 97 VLRRSKNFTSNVAIRMPPVIPINHYLGVLKT--NK-IEPRSYSII-PCTEIFKQH 249 V +R N I +P ++ H+L ++KT NK +E Y II P EI +H Sbjct: 589 VSKRLANTNHPAMITVPDMVAAKHWLKLIKTEHNKEVENMKYQIIQPTLEINPKH 643 >SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1449 Score = 27.1 bits (57), Expect = 5.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 104 DDPRISPLTXQYEC 145 DDPR+SP + QY C Sbjct: 241 DDPRVSPTSQQYAC 254 >SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16) Length = 848 Score = 26.2 bits (55), Expect = 9.8 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = -3 Query: 342 ISKSYRGALRXVSRWXDNFTLXKLECSKRVKML 244 ++K + R + R+ + T+ K +C KR+K+L Sbjct: 328 LNKDAQLRTRNLKRYINQCTVAKAQCEKRIKLL 360 >SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 53 Score = 26.2 bits (55), Expect = 9.8 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = -3 Query: 183 QNSXVMINRDNWGHSY-CXVRGEILGSSQDEHQRKHLP 73 Q V +++ GH Y C GE++ S++D H+ +P Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,930,010 Number of Sequences: 59808 Number of extensions: 136730 Number of successful extensions: 233 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 233 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 703143849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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