Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0804.Seq
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 2e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 9e-06
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.049
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 27 4.3
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 5.6
SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16) 26 9.8
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/38 (71%), Positives = 28/38 (73%)
Frame = -2
Query: 115 SWIVARRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
SWI RRT+AKAFA VFINQER E RRR DT VLT
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -2
Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
RRT+AKAFA VFINQER E RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -2
Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
RRT+AKAFA VFINQER E RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -2
Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
RRT+AKAFA VFINQER E RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 48.4 bits (110), Expect = 2e-06
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -2
Query: 100 RRTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
RRT+AKAFA VFINQER E RRR DT VLT
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 46.4 bits (105), Expect = 9e-06
Identities = 23/32 (71%), Positives = 24/32 (75%)
Frame = -2
Query: 97 RTSAKAFAXGVFINQERNXEVRRRLDTAXVLT 2
RT+AKAFA VFINQER E RRR DT VLT
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -2
Query: 97 RTSAKAFAXGVFINQERNXEVRRRLDT 17
RT+AKAFA VFINQER E RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 35.9 bits (79), Expect = 0.012
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2
R+T+ ++ A VFINQER E RRR DT VLT
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
VKFLD RKTN ESI F K
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERK 27
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = -1
Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
VKFLD RKTN ESIC CF K
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -2
Query: 64 FINQERNXEVRRRLDTAXVLT 2
FINQER E RRR DT VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = -1
Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
VKFLD RKTN ESIC CF K
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERK 27
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -2
Query: 64 FINQERNXEVRRRLDTAXVLT 2
FINQER E RRR DT VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 33.9 bits (74), Expect = 0.049
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAXGVFINQERNXEVRRRLDTAXVLT 2
R+T+ ++ VFINQER E RRR DT VLT
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -1
Query: 122 VKFLDRRKTNISESICXXCFHQSRTK 45
VKFLD RKTN ESIC F K
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERK 27
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -2
Query: 64 FINQERNXEVRRRLDTAXVLT 2
FINQER E RRR DT VLT
Sbjct: 21 FINQERKLEDRRRSDTVLVLT 41
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 119 KFLDRRKTNISESICXXCFHQSRTK 45
+ L RKTN ESIC CF K
Sbjct: 3 EILGFRKTNYCESICQECFINQERK 27
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 97 VLRRSKNFTSNVAIRMPPVIPINHYLGVLKT--NK-IEPRSYSII-PCTEIFKQH 249
V +R N I +P ++ H+L ++KT NK +E Y II P EI +H
Sbjct: 589 VSKRLANTNHPAMITVPDMVAAKHWLKLIKTEHNKEVENMKYQIIQPTLEINPKH 643
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 104 DDPRISPLTXQYEC 145
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
>SB_43841| Best HMM Match : PXA (HMM E-Value=1e-16)
Length = 848
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 342 ISKSYRGALRXVSRWXDNFTLXKLECSKRVKML 244
++K + R + R+ + T+ K +C KR+K+L
Sbjct: 328 LNKDAQLRTRNLKRYINQCTVAKAQCEKRIKLL 360
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 183 QNSXVMINRDNWGHSY-CXVRGEILGSSQDEHQRKHLP 73
Q V +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,930,010
Number of Sequences: 59808
Number of extensions: 136730
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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