Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0803.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 5e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 31 0.62
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 3.3
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 28 4.4
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 28 4.4
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -2
Query: 115 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
SWI RRT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 100 RRTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
RRT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 100 RRTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
RRT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 100 RRTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
RRT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 100 RRTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
RRT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -2
Query: 97 RTSAKAFAKGVFINQERKLEVRRRLDTAQVLT 2
RT+AKAFAK VFINQERKLE RRR DT VLT
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 97 RTSAKAFAKGVFINQERKLEVRRRLDT 17
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 506 AAVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AAVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 35 AAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 506 AAVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AAVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 80 AAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 110
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 506 AAVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AAVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 72 AAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 506 AAVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AAVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 25 AAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 506 AAVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AAVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 12 AAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -1
Query: 503 AVIPAPIAYTKIVAVKKLVVAFVRRAVGAP 414
AVIPAPIAY K+VAVKKLVV F VG P
Sbjct: 9 AVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 38
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/34 (64%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAKGVFINQERKLEVRRRLDTAQVLT 2
R+T+ ++ AK VFINQERKLE RRR DT VLT
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 122 VKFLDRRKTNISESICQRCFHQSRTKV 42
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 122 VKFLDRRKTNISESICQRCFHQSRTKV 42
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAKGVFINQERKLEVRRRLDTAQVLT 2
R+T+ ++ + FINQERKLE RRR DT VLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 122 VKFLDRRKTNISESICQRCFHQSRTKV 42
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAKGVFINQERKLEVRRRLDTAQVLT 2
R+T+ ++ + FINQERKLE RRR DT VLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAKGVFINQERKLEVRRRLDTAQVLT 2
R+T+ ++ + VFINQERKLE RRR DT VLT
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41
Score = 33.9 bits (74), Expect = 0.088
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 122 VKFLDRRKTNISESICQRCFHQSRTKV 42
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 RRTS-AKAFAKGVFINQERKLEVRRRLDTAQVLT 2
R+T+ ++ + FINQERKLE RRR DT VLT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 119 KFLDRRKTNISESICQRCFHQSRTKV 42
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1
Query: 482 AYTKIVAVKKLVVAFVRRAVGAP 414
AY K+VAVKKLVV F VG P
Sbjct: 87 AYIKVVAVKKLVVGFRDGTVGPP 109
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 184 KTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHL 303
K + ++ Y+ + +S F RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 441 CNYELFNRNNFSIRYWSWNYRGCG 512
C + RN +RYW W R CG
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCG 114
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 208 SYSIIPCTKYSSSIFSRFEH 267
+Y IPCT Y+ +++SRF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 183 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 73
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 378 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 500
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
Length = 605
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 208 SYSIIPCTKYSSSIFSRFEH 267
+Y IPCT Y+ +++SRF H
Sbjct: 58 TYRGIPCTNYTENLWSRFWH 77
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 104 DDPRISPLTSQYEC 145
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,696
Number of Sequences: 59808
Number of extensions: 315568
Number of successful extensions: 894
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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