BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0803.Seq (548 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical ... 28 5.1 Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 6.7 U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 27 6.7 U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 27 6.7 Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 27 8.9 AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormo... 27 8.9 >AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical protein H41C03.3 protein. Length = 506 Score = 27.9 bits (59), Expect = 5.1 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = +3 Query: 381 CSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 500 C NV + P DSA H N +N I WNY Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250 >Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical protein R13H4.8 protein. Length = 212 Score = 27.5 bits (58), Expect = 6.7 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = -3 Query: 468 CCG*KARSCICAPRCRC 418 CCG C C PRC C Sbjct: 79 CCGCGCGCCCCRPRCCC 95 >U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical protein F41G3.10 protein. Length = 198 Score = 27.5 bits (58), Expect = 6.7 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 373 RRYAPQTCQYHRGCGAPTARRTNATTSFL 459 R+ P+TC Y G G T RT+ T + L Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTTCADL 158 >U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical protein F47D12.5 protein. Length = 633 Score = 27.5 bits (58), Expect = 6.7 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +1 Query: 118 FTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPC-TKYSSSIFSRFEHSNLFKVKLS 294 F N A + + HYLGV + + +E +++ KY + +RF+ S K+ ++ Sbjct: 223 FLLNTATLTSSLKSLTHYLGVHRISSVERVLENMLHLFPKYDPDLDNRFDFSECVKIIIN 282 Query: 295 AHL 303 + L Sbjct: 283 SAL 285 >Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical protein ZK265.7 protein. Length = 370 Score = 27.1 bits (57), Expect = 8.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 314 EEHRDRILILNRRFLERRLTDDMLRKRV 397 EE R+R + RR ERRL +D + +R+ Sbjct: 294 EEERERYRMERRRAEERRLQEDTILRRI 321 >AC006675-6|AAK84556.2| 433|Caenorhabditis elegans Nuclear hormone receptor familyprotein 98 protein. Length = 433 Score = 27.1 bits (57), Expect = 8.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 113 LDRRKTNISESICQRCFHQSRTKVRGS 33 L+ +S ICQ CFHQ K++G+ Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,064,741 Number of Sequences: 27780 Number of extensions: 243939 Number of successful extensions: 634 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 628 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1113119490 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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