Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0802.Seq
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    80   1e-16
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    80   1e-16
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    70   1e-13
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    52   3e-08
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   1.2  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   2.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.1  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   4.8  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   4.8  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.4  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 33/53 (62%), Positives = 40/53 (75%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASP 233
           TP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + GDP +  + P
Sbjct: 763 TPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815



 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -1

Query: 257 PCEPQSKPYNVVQETRKRKGLKEGLP 180
           P +P SKP  +V E RKRKGLKE +P
Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 33/53 (62%), Positives = 40/53 (75%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASP 233
           TP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + GDP +  + P
Sbjct: 763 TPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815



 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -1

Query: 257 PCEPQSKPYNVVQETRKRKGLKEGLP 180
           P +P SKP  +V E RKRKGLKE +P
Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 983

 Score = 70.1 bits (164), Expect = 1e-13
 Identities = 33/70 (47%), Positives = 45/70 (64%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTT 227
            +P   +P+++V+A +PV +S GF  DLR +T GQA  Q VFDHWQV+PGDP +    P  
Sbjct: 874  IPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKP 933

Query: 226  LYRKRERGKD 197
            L  +  RG D
Sbjct: 934  L--EPARGSD 941


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1000

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = -2

Query: 391  TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            TP FIVKA +PV ESFGF  ++   T G A+PQ +F  +++L  +P
Sbjct: 901  TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 339 LLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQALQR 226
           +LP+ + TPA  P +  YS  G S    +    + LQ+
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVCVKRKILQQ 146


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 382 FIVKAYLPVNESFGFTADLRSNTGGQ 305
           F ++A +P+N  F +++D+R+ T G+
Sbjct: 714 FTLQAEVPLNSMFSYSSDIRALTKGK 739


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 129  NLL*LCSLQFVQILS*V-WETFLQSFPLSRFLYNVVGLALRFAGSPGRTCQWSNTHC 296
            N+  L + + + ++S + W   +  F +  F+Y+ VG +  F  S  RTCQ     C
Sbjct: 1229 NIFILMNQERLNLISLITWMFSIGVFWIWTFIYSEVGPSYAFHKSASRTCQTFGFWC 1285


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 37  SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVFLICFNYVV 150
           SH  +C N +  +   C    TC+ R  YRY F+   + V+
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 236 ACSEVRRVSREDLPMVEYALREGLSAGVGTQIGS 337
           A S  + +S E++    + +  GLSA  GT++GS
Sbjct: 144 AKSGSKNLSSENMATEIFEINSGLSAQSGTEVGS 177


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 257 PCEPQSKPYNVVQETRKRKG 198
           P  P  +P+NV Q  +KR G
Sbjct: 88  PSLPDQEPWNVFQNAKKRDG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,379
Number of Sequences: 5004
Number of extensions: 34096
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)