BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0802.Seq (422 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 80 1e-16 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 80 1e-16 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 70 1e-13 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 52 3e-08 SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 1.2 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 2.1 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 2.1 SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 4.8 SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 4.8 SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.4 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 80.2 bits (189), Expect = 1e-16 Identities = 33/53 (62%), Positives = 40/53 (75%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASP 233 TP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP + + P Sbjct: 763 TPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815 Score = 37.9 bits (84), Expect = 6e-04 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = -1 Query: 257 PCEPQSKPYNVVQETRKRKGLKEGLP 180 P +P SKP +V E RKRKGLKE +P Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 80.2 bits (189), Expect = 1e-16 Identities = 33/53 (62%), Positives = 40/53 (75%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASP 233 TP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP + + P Sbjct: 763 TPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815 Score = 37.9 bits (84), Expect = 6e-04 Identities = 16/26 (61%), Positives = 19/26 (73%) Frame = -1 Query: 257 PCEPQSKPYNVVQETRKRKGLKEGLP 180 P +P SKP +V E RKRKGLKE +P Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 70.1 bits (164), Expect = 1e-13 Identities = 33/70 (47%), Positives = 45/70 (64%) Frame = -2 Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTT 227 +P +P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+PGDP + P Sbjct: 874 IPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKP 933 Query: 226 LYRKRERGKD 197 L + RG D Sbjct: 934 L--EPARGSD 941 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 52.4 bits (120), Expect = 3e-08 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254 TP FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P Sbjct: 901 TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946 >SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 27.1 bits (57), Expect = 1.2 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -3 Query: 339 LLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQALQR 226 +LP+ + TPA P + YS G S + + LQ+ Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVCVKRKILQQ 146 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 26.2 bits (55), Expect = 2.1 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = -2 Query: 382 FIVKAYLPVNESFGFTADLRSNTGGQ 305 F ++A +P+N F +++D+R+ T G+ Sbjct: 714 FTLQAEVPLNSMFSYSSDIRALTKGK 739 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 26.2 bits (55), Expect = 2.1 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 129 NLL*LCSLQFVQILS*V-WETFLQSFPLSRFLYNVVGLALRFAGSPGRTCQWSNTHC 296 N+ L + + + ++S + W + F + F+Y+ VG + F S RTCQ C Sbjct: 1229 NIFILMNQERLNLISLITWMFSIGVFWIWTFIYSEVGPSYAFHKSASRTCQTFGFWC 1285 >SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 25.0 bits (52), Expect = 4.8 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = +1 Query: 37 SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVFLICFNYVV 150 SH +C N + + C TC+ R YRY F+ + V+ Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236 >SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 809 Score = 25.0 bits (52), Expect = 4.8 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 236 ACSEVRRVSREDLPMVEYALREGLSAGVGTQIGS 337 A S + +S E++ + + GLSA GT++GS Sbjct: 144 AKSGSKNLSSENMATEIFEINSGLSAQSGTEVGS 177 >SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 128 Score = 24.6 bits (51), Expect = 6.4 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -1 Query: 257 PCEPQSKPYNVVQETRKRKG 198 P P +P+NV Q +KR G Sbjct: 88 PSLPDQEPWNVFQNAKKRDG 107 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,712,379 Number of Sequences: 5004 Number of extensions: 34096 Number of successful extensions: 77 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 77 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 150383836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -