BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0802.Seq (422 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0017 + 18937774-18937864,18938505-18940945 79 1e-15 04_01_0103 + 1082077-1082167,1083037-1085477 77 4e-15 06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 74 4e-14 01_06_0662 + 30987187-30987277,30987825-30990214 72 2e-13 01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 66 8e-12 03_05_0511 + 25056018-25059107 53 8e-08 02_04_0148 - 20198407-20201424 45 2e-05 10_05_0023 + 8171023-8171782,8172658-8172950 31 0.38 11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 30 0.88 04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 29 2.0 02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 2.7 03_05_0267 - 22538631-22539452 28 3.6 12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 27 4.7 11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 4.7 05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304,732... 27 6.2 12_01_0587 - 4793571-4793861 27 8.2 05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 27 8.2 03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 27 8.2 02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 27 8.2 >02_04_0017 + 18937774-18937864,18938505-18940945 Length = 843 Score = 79.0 bits (186), Expect = 1e-15 Identities = 33/64 (51%), Positives = 45/64 (70%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212 TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP + +TL + Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDI 823 Query: 211 ERGK 200 + K Sbjct: 824 RKRK 827 Score = 28.7 bits (61), Expect = 2.0 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -1 Query: 257 PCEPQSKPYNVVQETRKRKGLKE 189 P E S+ +VQ+ RKRKGLKE Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831 >04_01_0103 + 1082077-1082167,1083037-1085477 Length = 843 Score = 77.4 bits (182), Expect = 4e-15 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 3/68 (4%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTL---Y 221 TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP + + L Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDI 823 Query: 220 RKRERGKD 197 RKR+ K+ Sbjct: 824 RKRKGLKE 831 >06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017, 23824124-23824322,23824410-23824495,23824940-23825098, 23825204-23825302,23825385-23826578,23826666-23826734, 23828042-23828812 Length = 997 Score = 74.1 bits (174), Expect = 4e-14 Identities = 32/51 (62%), Positives = 39/51 (76%) Frame = -2 Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254 VP TP+++VKA+LPV ESFGF DLR +T GQAF VFDHW ++PGDP Sbjct: 885 VPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 935 >01_06_0662 + 30987187-30987277,30987825-30990214 Length = 826 Score = 71.7 bits (168), Expect = 2e-13 Identities = 34/64 (53%), Positives = 42/64 (65%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212 TP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDHW++L DP TL Sbjct: 762 TPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTRQLTLSWIS 821 Query: 211 ERGK 200 RG+ Sbjct: 822 ARGR 825 >01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 Length = 853 Score = 66.5 bits (155), Expect = 8e-12 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 3/68 (4%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP---ANLRASPTTLY 221 TP+ ++ YLPV +SF FT LR+ T GQAFPQC+F HWQ + DP + A T Sbjct: 774 TPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDI 833 Query: 220 RKRERGKD 197 RKR+ KD Sbjct: 834 RKRKGLKD 841 >03_05_0511 + 25056018-25059107 Length = 1029 Score = 53.2 bits (122), Expect = 8e-08 Identities = 24/46 (52%), Positives = 29/46 (63%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254 T +F V AYLPV ES GF+ +LRS T G A V HW+ +P DP Sbjct: 927 TSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972 >02_04_0148 - 20198407-20201424 Length = 1005 Score = 45.2 bits (102), Expect = 2e-05 Identities = 21/46 (45%), Positives = 26/46 (56%) Frame = -2 Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254 T +F V AYL V ES F+ LR+ T G A F HW+ +P DP Sbjct: 903 TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948 >10_05_0023 + 8171023-8171782,8172658-8172950 Length = 350 Score = 31.1 bits (67), Expect = 0.38 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -1 Query: 317 HRRTGL-PAVRIR-PLAGPPWRP--CEPQSKPYNVVQETRKRKGLK 192 H +T L P+V+ R P PW P C P S Y+V T++ KG K Sbjct: 78 HTKTSLQPSVQSREPNGENPWNPGNCFPPSLSYHVGSRTKQAKGKK 123 >11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629, 3977734-3977850,3978012-3978188,3978282-3978379, 3978478-3978544,3978651-3978741,3978847-3978939, 3979049-3979380,3979938-3980189 Length = 548 Score = 29.9 bits (64), Expect = 0.88 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -3 Query: 321 PTPADRPSRSAYSTIGRSSLETLRTSEQALQR-CTGNEKEERIE--GRSPRLNSIFGQIV 151 P PA + ++A G+ + + TS + + +GN E+ E +SP L ++ G I Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125 Query: 150 NYIVKAN*KNVSI 112 NYI + + I Sbjct: 126 NYIATKKGRKIKI 138 >04_04_0503 - 25701050-25701343,25701431-25701528,25701629-25701689, 25701772-25701842,25701922-25702048,25702160-25702244, 25702346-25702409,25702732-25702793,25703214-25703284, 25703700-25703795,25703960-25704108,25704196-25704265, 25704483-25704523,25704668-25704743 Length = 454 Score = 28.7 bits (61), Expect = 2.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 306 RPSRSAYSTIGRSSLETLRTSEQALQRCTGN 214 RPS +GRS+ T RT+ +AL R TG+ Sbjct: 304 RPSGKTSGLVGRSAERTERTTGEALARRTGS 334 >02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140, 1915205-1915249,1915335-1915870,1915987-1916041 Length = 750 Score = 28.3 bits (60), Expect = 2.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 233 RACSEVRRVSREDLPMVEYALREGLS 310 R C++V R S++D P+ YA GL+ Sbjct: 316 RLCADVARCSKDDYPLAHYAGMYGLA 341 >03_05_0267 - 22538631-22539452 Length = 273 Score = 27.9 bits (59), Expect = 3.6 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%) Frame = -1 Query: 305 GLPAVRIR--PLAGPPWRPCEPQSKP 234 G P VR R P A P W PC P S P Sbjct: 164 GGPTVRRRASPPARPRWWPCSPSSPP 189 >12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279, 1012384-1012469,1012989-1013088,1014139-1014333 Length = 251 Score = 27.5 bits (58), Expect = 4.7 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 393 GHLCSL*RPTYLSMSRSVLLPICVPTPA 310 GHLC L PT+L S S L +C P P+ Sbjct: 8 GHLC-LFLPTFLKESASNHLSLCFPFPS 34 >11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 Length = 767 Score = 27.5 bits (58), Expect = 4.7 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -3 Query: 183 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHVKA 52 PR + +++NYIV + K+ + S +PHH+K+ Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432 >05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304, 7320387-7320427,7320617-7320702,7321384-7321502, 7321609-7321783 Length = 276 Score = 27.1 bits (57), Expect = 6.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -3 Query: 324 VPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNE--KEERIEGRSPRLNSIF 163 +P PA R S SAY+ R L +LR + E K+++ +GR P N IF Sbjct: 28 IPLPALRLSSSAYAARRRDLLRSLRCGMRRSDLVADLELAKDKQWQGRRP--NGIF 81 >12_01_0587 - 4793571-4793861 Length = 96 Score = 26.6 bits (56), Expect = 8.2 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = -3 Query: 369 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEER 199 P Y + + I TP D R + S +T+R E A+ TG+ EE+ Sbjct: 20 PQYTEQQKPIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRDESAISDLTGHGFEEQ 76 >05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036, 9806710-9807680 Length = 727 Score = 26.6 bits (56), Expect = 8.2 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -1 Query: 317 HRRTGL-PAVRIRPLAGP-PWRP--CEPQSKPYNVVQETRKRKGLK 192 H ++ L P+V+ R L G P P C P S Y+V T++ KG K Sbjct: 459 HTKSSLQPSVQSRELNGENPLNPGKCFPPSLSYHVGSHTKQAKGKK 504 >03_05_0044 + 20203644-20204054,20204695-20204916,20205092-20205130, 20206275-20206396,20206489-20206639,20207892-20207963, 20208256-20208351,20208861-20208949,20209068-20209134, 20210197-20210235,20210369-20210429,20210572-20210681, 20210766-20210840,20210914-20210982,20213126-20213247, 20214682-20214807,20214897-20215017,20215133-20215233, 20215564-20215624,20216560-20216613,20217585-20217689 Length = 770 Score = 26.6 bits (56), Expect = 8.2 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -2 Query: 379 IVKAYLPVNESFGFTADLRSNTGGQ 305 +V ++P+N FG++ LRS T G+ Sbjct: 714 VVVCHVPLNNMFGYSTALRSMTQGK 738 >02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794, 4409870-4409937,4410024-4410068,4410478-4410655, 4410740-4410871,4410941-4411009,4411258-4411305, 4411498-4411545,4411654-4411763,4412044-4412125, 4412232-4412345 Length = 443 Score = 26.6 bits (56), Expect = 8.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 112 YRYVFLICFNYVVYNLSK 165 +RY+FL+C YV YN SK Sbjct: 44 FRYLFLVC--YVFYNYSK 59 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,522,208 Number of Sequences: 37544 Number of extensions: 237279 Number of successful extensions: 708 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 692 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 708 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 778540620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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