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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0802.Seq
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0017 + 18937774-18937864,18938505-18940945                       79   1e-15
04_01_0103 + 1082077-1082167,1083037-1085477                           77   4e-15
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    74   4e-14
01_06_0662 + 30987187-30987277,30987825-30990214                       72   2e-13
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     66   8e-12
03_05_0511 + 25056018-25059107                                         53   8e-08
02_04_0148 - 20198407-20201424                                         45   2e-05
10_05_0023 + 8171023-8171782,8172658-8172950                           31   0.38 
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397...    30   0.88 
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016...    29   2.0  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    28   2.7  
03_05_0267 - 22538631-22539452                                         28   3.6  
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101...    27   4.7  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           27   4.7  
05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304,732...    27   6.2  
12_01_0587 - 4793571-4793861                                           27   8.2  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    27   8.2  
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051...    27   8.2  
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440...    27   8.2  

>02_04_0017 + 18937774-18937864,18938505-18940945
          Length = 843

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 33/64 (51%), Positives = 45/64 (70%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
           TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++  DP    +  +TL +  
Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDI 823

Query: 211 ERGK 200
            + K
Sbjct: 824 RKRK 827



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 257 PCEPQSKPYNVVQETRKRKGLKE 189
           P E  S+   +VQ+ RKRKGLKE
Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831


>04_01_0103 + 1082077-1082167,1083037-1085477
          Length = 843

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTL---Y 221
           TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++  DP  + +    L    
Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDI 823

Query: 220 RKRERGKD 197
           RKR+  K+
Sbjct: 824 RKRKGLKE 831


>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
            23824124-23824322,23824410-23824495,23824940-23825098,
            23825204-23825302,23825385-23826578,23826666-23826734,
            23828042-23828812
          Length = 997

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            VP   TP+++VKA+LPV ESFGF  DLR +T GQAF   VFDHW ++PGDP
Sbjct: 885  VPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 935


>01_06_0662 + 30987187-30987277,30987825-30990214
          Length = 826

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 34/64 (53%), Positives = 42/64 (65%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
           TP++ +KAYLPV ESFGFT+ LR+ T GQAFP  VFDHW++L  DP        TL    
Sbjct: 762 TPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTRQLTLSWIS 821

Query: 211 ERGK 200
            RG+
Sbjct: 822 ARGR 825


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 66.5 bits (155), Expect = 8e-12
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP---ANLRASPTTLY 221
           TP+  ++ YLPV +SF FT  LR+ T GQAFPQC+F HWQ +  DP    +  A   T  
Sbjct: 774 TPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDI 833

Query: 220 RKRERGKD 197
           RKR+  KD
Sbjct: 834 RKRKGLKD 841


>03_05_0511 + 25056018-25059107
          Length = 1029

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 24/46 (52%), Positives = 29/46 (63%)
 Frame = -2

Query: 391  TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            T +F V AYLPV ES GF+ +LRS T G A    V  HW+ +P DP
Sbjct: 927  TSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972


>02_04_0148 - 20198407-20201424
          Length = 1005

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = -2

Query: 391  TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            T +F V AYL V ES  F+  LR+ T G A     F HW+ +P DP
Sbjct: 903  TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948


>10_05_0023 + 8171023-8171782,8172658-8172950
          Length = 350

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 317 HRRTGL-PAVRIR-PLAGPPWRP--CEPQSKPYNVVQETRKRKGLK 192
           H +T L P+V+ R P    PW P  C P S  Y+V   T++ KG K
Sbjct: 78  HTKTSLQPSVQSREPNGENPWNPGNCFPPSLSYHVGSRTKQAKGKK 123


>11_01_0513 -
           3977031-3977328,3977425-3977469,3977553-3977629,
           3977734-3977850,3978012-3978188,3978282-3978379,
           3978478-3978544,3978651-3978741,3978847-3978939,
           3979049-3979380,3979938-3980189
          Length = 548

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -3

Query: 321 PTPADRPSRSAYSTIGRSSLETLRTSEQALQR-CTGNEKEERIE--GRSPRLNSIFGQIV 151
           P PA +  ++A    G+  +  + TS +   +  +GN  E+  E   +SP L ++ G I 
Sbjct: 68  PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125

Query: 150 NYIVKAN*KNVSI 112
           NYI     + + I
Sbjct: 126 NYIATKKGRKIKI 138


>04_04_0503 -
           25701050-25701343,25701431-25701528,25701629-25701689,
           25701772-25701842,25701922-25702048,25702160-25702244,
           25702346-25702409,25702732-25702793,25703214-25703284,
           25703700-25703795,25703960-25704108,25704196-25704265,
           25704483-25704523,25704668-25704743
          Length = 454

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 306 RPSRSAYSTIGRSSLETLRTSEQALQRCTGN 214
           RPS      +GRS+  T RT+ +AL R TG+
Sbjct: 304 RPSGKTSGLVGRSAERTERTTGEALARRTGS 334


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 233 RACSEVRRVSREDLPMVEYALREGLS 310
           R C++V R S++D P+  YA   GL+
Sbjct: 316 RLCADVARCSKDDYPLAHYAGMYGLA 341


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 305 GLPAVRIR--PLAGPPWRPCEPQSKP 234
           G P VR R  P A P W PC P S P
Sbjct: 164 GGPTVRRRASPPARPRWWPCSPSSPP 189


>12_01_0133 -
           1011442-1011609,1011792-1011906,1012188-1012279,
           1012384-1012469,1012989-1013088,1014139-1014333
          Length = 251

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 393 GHLCSL*RPTYLSMSRSVLLPICVPTPA 310
           GHLC L  PT+L  S S  L +C P P+
Sbjct: 8   GHLC-LFLPTFLKESASNHLSLCFPFPS 34


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 183 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHVKA 52
           PR    + +++NYIV  + K+  +         S   +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432


>05_03_0007 -
           7318113-7318292,7319984-7320046,7320138-7320304,
           7320387-7320427,7320617-7320702,7321384-7321502,
           7321609-7321783
          Length = 276

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 324 VPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNE--KEERIEGRSPRLNSIF 163
           +P PA R S SAY+   R  L +LR   +        E  K+++ +GR P  N IF
Sbjct: 28  IPLPALRLSSSAYAARRRDLLRSLRCGMRRSDLVADLELAKDKQWQGRRP--NGIF 81


>12_01_0587 - 4793571-4793861
          Length = 96

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 369 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEER 199
           P Y    + +   I   TP D   R  +      S +T+R  E A+   TG+  EE+
Sbjct: 20  PQYTEQQKPIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRDESAISDLTGHGFEEQ 76


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 317 HRRTGL-PAVRIRPLAGP-PWRP--CEPQSKPYNVVQETRKRKGLK 192
           H ++ L P+V+ R L G  P  P  C P S  Y+V   T++ KG K
Sbjct: 459 HTKSSLQPSVQSRELNGENPLNPGKCFPPSLSYHVGSHTKQAKGKK 504


>03_05_0044 +
           20203644-20204054,20204695-20204916,20205092-20205130,
           20206275-20206396,20206489-20206639,20207892-20207963,
           20208256-20208351,20208861-20208949,20209068-20209134,
           20210197-20210235,20210369-20210429,20210572-20210681,
           20210766-20210840,20210914-20210982,20213126-20213247,
           20214682-20214807,20214897-20215017,20215133-20215233,
           20215564-20215624,20216560-20216613,20217585-20217689
          Length = 770

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 379 IVKAYLPVNESFGFTADLRSNTGGQ 305
           +V  ++P+N  FG++  LRS T G+
Sbjct: 714 VVVCHVPLNNMFGYSTALRSMTQGK 738


>02_01_0593 +
           4408229-4408294,4408764-4409096,4409756-4409794,
           4409870-4409937,4410024-4410068,4410478-4410655,
           4410740-4410871,4410941-4411009,4411258-4411305,
           4411498-4411545,4411654-4411763,4412044-4412125,
           4412232-4412345
          Length = 443

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 112 YRYVFLICFNYVVYNLSK 165
           +RY+FL+C  YV YN SK
Sbjct: 44  FRYLFLVC--YVFYNYSK 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,208
Number of Sequences: 37544
Number of extensions: 237279
Number of successful extensions: 708
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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