Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0802.Seq
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 79 1e-15
04_01_0103 + 1082077-1082167,1083037-1085477 77 4e-15
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 74 4e-14
01_06_0662 + 30987187-30987277,30987825-30990214 72 2e-13
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 66 8e-12
03_05_0511 + 25056018-25059107 53 8e-08
02_04_0148 - 20198407-20201424 45 2e-05
10_05_0023 + 8171023-8171782,8172658-8172950 31 0.38
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 30 0.88
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 29 2.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 2.7
03_05_0267 - 22538631-22539452 28 3.6
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 27 4.7
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 4.7
05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304,732... 27 6.2
12_01_0587 - 4793571-4793861 27 8.2
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 27 8.2
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 27 8.2
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 27 8.2
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 79.0 bits (186), Expect = 1e-15
Identities = 33/64 (51%), Positives = 45/64 (70%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP + +TL +
Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDI 823
Query: 211 ERGK 200
+ K
Sbjct: 824 RKRK 827
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 257 PCEPQSKPYNVVQETRKRKGLKE 189
P E S+ +VQ+ RKRKGLKE
Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 77.4 bits (182), Expect = 4e-15
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTL---Y 221
TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP + + L
Sbjct: 764 TPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDI 823
Query: 220 RKRERGKD 197
RKR+ K+
Sbjct: 824 RKRKGLKE 831
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 74.1 bits (174), Expect = 4e-14
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
VP TP+++VKA+LPV ESFGF DLR +T GQAF VFDHW ++PGDP
Sbjct: 885 VPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 935
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 71.7 bits (168), Expect = 2e-13
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
TP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDHW++L DP TL
Sbjct: 762 TPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTRQLTLSWIS 821
Query: 211 ERGK 200
RG+
Sbjct: 822 ARGR 825
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 66.5 bits (155), Expect = 8e-12
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP---ANLRASPTTLY 221
TP+ ++ YLPV +SF FT LR+ T GQAFPQC+F HWQ + DP + A T
Sbjct: 774 TPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDI 833
Query: 220 RKRERGKD 197
RKR+ KD
Sbjct: 834 RKRKGLKD 841
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 53.2 bits (122), Expect = 8e-08
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
T +F V AYLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 927 TSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
T +F V AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 903 TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 31.1 bits (67), Expect = 0.38
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -1
Query: 317 HRRTGL-PAVRIR-PLAGPPWRP--CEPQSKPYNVVQETRKRKGLK 192
H +T L P+V+ R P PW P C P S Y+V T++ KG K
Sbjct: 78 HTKTSLQPSVQSREPNGENPWNPGNCFPPSLSYHVGSRTKQAKGKK 123
>11_01_0513 -
3977031-3977328,3977425-3977469,3977553-3977629,
3977734-3977850,3978012-3978188,3978282-3978379,
3978478-3978544,3978651-3978741,3978847-3978939,
3979049-3979380,3979938-3980189
Length = 548
Score = 29.9 bits (64), Expect = 0.88
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -3
Query: 321 PTPADRPSRSAYSTIGRSSLETLRTSEQALQR-CTGNEKEERIE--GRSPRLNSIFGQIV 151
P PA + ++A G+ + + TS + + +GN E+ E +SP L ++ G I
Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125
Query: 150 NYIVKAN*KNVSI 112
NYI + + I
Sbjct: 126 NYIATKKGRKIKI 138
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 306 RPSRSAYSTIGRSSLETLRTSEQALQRCTGN 214
RPS +GRS+ T RT+ +AL R TG+
Sbjct: 304 RPSGKTSGLVGRSAERTERTTGEALARRTGS 334
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 233 RACSEVRRVSREDLPMVEYALREGLS 310
R C++V R S++D P+ YA GL+
Sbjct: 316 RLCADVARCSKDDYPLAHYAGMYGLA 341
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 305 GLPAVRIR--PLAGPPWRPCEPQSKP 234
G P VR R P A P W PC P S P
Sbjct: 164 GGPTVRRRASPPARPRWWPCSPSSPP 189
>12_01_0133 -
1011442-1011609,1011792-1011906,1012188-1012279,
1012384-1012469,1012989-1013088,1014139-1014333
Length = 251
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 393 GHLCSL*RPTYLSMSRSVLLPICVPTPA 310
GHLC L PT+L S S L +C P P+
Sbjct: 8 GHLC-LFLPTFLKESASNHLSLCFPFPS 34
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 183 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHVKA 52
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>05_03_0007 -
7318113-7318292,7319984-7320046,7320138-7320304,
7320387-7320427,7320617-7320702,7321384-7321502,
7321609-7321783
Length = 276
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 324 VPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNE--KEERIEGRSPRLNSIF 163
+P PA R S SAY+ R L +LR + E K+++ +GR P N IF
Sbjct: 28 IPLPALRLSSSAYAARRRDLLRSLRCGMRRSDLVADLELAKDKQWQGRRP--NGIF 81
>12_01_0587 - 4793571-4793861
Length = 96
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 369 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEER 199
P Y + + I TP D R + S +T+R E A+ TG+ EE+
Sbjct: 20 PQYTEQQKPIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRDESAISDLTGHGFEEQ 76
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -1
Query: 317 HRRTGL-PAVRIRPLAGP-PWRP--CEPQSKPYNVVQETRKRKGLK 192
H ++ L P+V+ R L G P P C P S Y+V T++ KG K
Sbjct: 459 HTKSSLQPSVQSRELNGENPLNPGKCFPPSLSYHVGSHTKQAKGKK 504
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 379 IVKAYLPVNESFGFTADLRSNTGGQ 305
+V ++P+N FG++ LRS T G+
Sbjct: 714 VVVCHVPLNNMFGYSTALRSMTQGK 738
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 112 YRYVFLICFNYVVYNLSK 165
+RY+FL+C YV YN SK
Sbjct: 44 FRYLFLVC--YVFYNYSK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,208
Number of Sequences: 37544
Number of extensions: 237279
Number of successful extensions: 708
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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