Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0802.Seq
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 101 2e-22
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 4e-12
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 68 4e-12
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 52 1e-07
SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 29 1.2
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 29 2.1
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 2.8
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 28 3.7
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 28 3.7
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 4.8
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 27 4.8
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 101 bits (242), Expect = 2e-22
Identities = 45/53 (84%), Positives = 47/53 (88%)
Frame = -2
Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASP 233
TPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDHWQVLPGD +L + P
Sbjct: 754 TPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMP 806
Score = 33.9 bits (74), Expect = 0.056
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 242 SKPYNVVQETRKRKGLKEGLP 180
S P VV TRKRKGLKEG+P
Sbjct: 804 SMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = -2
Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
VPG +P++ +KA++P +SFGF DLR++T GQAF VF HWQ++PGDP
Sbjct: 731 VPG--SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDP 779
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 67.7 bits (158), Expect = 4e-12
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = -2
Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
VPG +P++ +KA++P +SFGF DLR++T GQAF VF HWQ++PGDP
Sbjct: 41 VPG--SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDP 89
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 52.4 bits (120), Expect = 1e-07
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 385 MFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
+F V+A LPV ESFGF+ ++R T G A PQ +F HW+ + DP
Sbjct: 452 VFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFSHWEAIDLDP 495
>SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.7 bits (66), Expect = 0.52
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 321 PTPAD-RPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEERIEGRSPRL 175
P P+D P S Y + S+LE ++T E Q CTG+++ R ++P +
Sbjct: 52 PIPSDYEPVPSDYEPVP-STLEPIQTPESPYQTCTGSQRPPRDLYQTPTI 100
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 242 SEVRRVSREDLPMVEYALREGLSAGVGTQIGSKTERLIDR*VGLHNEHRCPATWDSSKT 418
SEVR +P + LR G+ + + + + + ++DR G H + R P T T
Sbjct: 1068 SEVRDFQIPHIPSRKVQLRIGIHSALRIHVSPECKEVLDRLGGYHLDERGPVTMKGKGT 1126
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 382 FIVKAYLPVNESFGFTADLRSNTGGQ 305
F + A +P+N+ FG+ +LRS T G+
Sbjct: 178 FTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 276 QWSNTHCGKACPPVLE--RKSAVKPNDSL 356
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = -3
Query: 318 TPADRPSRSAYSTIGRSSLETLRTSEQALQR----CTGNEKEERIEGRSPRLNSIFGQIV 151
TPA+ ++ + RSSL+T+ LQR C K++R R+P Q+
Sbjct: 241 TPAEEHAQLRVCAVVRSSLKTIDIRRVRLQRSMRSCAKLTKDDRYSTRTPA--EEHAQLG 298
Query: 150 NY-IVKAN*KNVSIR 109
Y +V+++ K + IR
Sbjct: 299 AYAVVRSSLKTIDIR 313
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 315 PADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEERIEGRS 184
P ++P RS ++ + L+ + T E+++ + KEE ++ R+
Sbjct: 598 PKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA 641
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 422 VTFSKSPRWQDTYVHCEGLPTCQ*VVRFYCRFAFQHRRTGLPAVRIRP 279
V+FS+ + T HC TC+ + +CR + + + + RP
Sbjct: 3736 VSFSEMKKHMSTVHHCRPSKTCELCSKMFCRPEYVAKHVSMVHEKERP 3783
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 308 TGLP-AVRIRPLAGPPWRPC-EPQSKPYNVVQETRKRKGLKE 189
T LP A + LAG W+ + Q KPY E K++ LKE
Sbjct: 523 TPLPKANEVAKLAGEEWKKLNDEQKKPYVAKAEADKQRYLKE 564
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 321 PTPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEERIEGRSPRLN 172
P A+ P RS Y +S + +++ +GN K ++I R+P L+
Sbjct: 220 PDGAEEPDRSVYGDHRSTSSARSVSMPRSIDMFSGNAKLQQIPERAPLLH 269
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 357 SMSRSVLLPICVPTPADRPSRSAYST-IGRSSLETLRTSEQALQRCTGNEKEER 199
S RSV + TP PS S ST I +SS T+ + + + G+ +E R
Sbjct: 53 SYQRSVPVSTSSSTPVSSPSNSTPSTPIRKSSSVTVTLNRRISRESCGSGRESR 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,299,930
Number of Sequences: 59808
Number of extensions: 271022
Number of successful extensions: 831
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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