Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0802.Seq
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   108   1e-24
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   108   1e-24
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    66   7e-12
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        66   7e-12
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    46   8e-06
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    46   8e-06
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    30   0.79 
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    28   3.2  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    27   4.2  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    26   9.7  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  108 bits (260), Expect = 1e-24
 Identities = 50/68 (73%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLY--- 221
           TPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP      P  +    
Sbjct: 773 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDT 832

Query: 220 RKRERGKD 197
           RKR+  K+
Sbjct: 833 RKRKGLKE 840



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = -1

Query: 266 PWRPCEPQSKPYNVVQETRKRKGLKEGLP 180
           P  P E  +KP  +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  108 bits (260), Expect = 1e-24
 Identities = 50/68 (73%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLY--- 221
           TPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP      P  +    
Sbjct: 773 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDT 832

Query: 220 RKRERGKD 197
           RKR+  K+
Sbjct: 833 RKRKGLKE 840



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = -1

Query: 266 PWRPCEPQSKPYNVVQETRKRKGLKEGLP 180
           P  P E  +KP  +V +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            +PG  +PM+ + AY+PV +SFGF  DLR +T GQAF    F HWQ++PGDP
Sbjct: 867  MPG--SPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDP 915


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = -2

Query: 406 VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
           +PG  +PM+ + AY+PV +SFGF  DLR +T GQAF    F HWQ++PGDP
Sbjct: 742 MPG--SPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDP 790


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 27/63 (42%), Positives = 33/63 (52%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
           T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP     +P+TL    
Sbjct: 604 TNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP---YWTPSTLEEIE 660

Query: 211 ERG 203
           E G
Sbjct: 661 EFG 663


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 27/63 (42%), Positives = 33/63 (52%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPANLRASPTTLYRKR 212
           T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP     +P+TL    
Sbjct: 793 TNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP---YWTPSTLEEIE 849

Query: 211 ERG 203
           E G
Sbjct: 850 EFG 852


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 31  LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 150
           +L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 318 TPADRPSRSAYSTIGRSSLETLRTSEQALQRCTGNEKEERIEGRSPR 178
           T    P+ S YST  R S +    S++ +++   NEK E  E ++ +
Sbjct: 168 TELGSPTNSQYSTTTRKSSKKSTRSDRKMEKTQRNEKSEHTEEQTDK 214


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 263 REDLPMVEYALREGLSAGVGTQIGSKTERLID 358
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 272 GPPWRPCEPQSKPYNVVQETRK--RKGLKEGLP 180
           G PWR C+ +++   + + TRK  R  L +G+P
Sbjct: 230 GLPWRHCKVKNEVLKIKENTRKDNRAALYKGIP 262


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 299 PAVRIRPLAGPPWRPCEPQSKP 234
           P     P+  PPW+PC PQ  P
Sbjct: 133 PQQPCEPITPPPWKPC-PQGPP 153


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 343 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 257
           G   D + NT G    QC+ +HW+  PG+
Sbjct: 355 GHCIDCQGNTQGVHCEQCIANHWR-RPGE 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,195
Number of Sequences: 27780
Number of extensions: 202803
Number of successful extensions: 592
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)