Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0802.Seq
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 SKPYNVVQETRKRKGLKEGLP 180
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 242 SKPYNVVQETRKRKGLKEGLP 180
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 273 CQWSNTHCGKACPP 314
           CQ  N HC   C P
Sbjct: 36  CQAVNGHCSHLCLP 49


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 273 CQWSNTHCGKACPP 314
           CQ  N HC   C P
Sbjct: 36  CQAVNGHCSHLCLP 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,713
Number of Sequences: 438
Number of extensions: 2334
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)