Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0802.Seq
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...    77   5e-15
At5g25230.1 68418.m02991 elongation factor Tu family protein tra...    74   5e-14
At1g06220.2 68414.m00656 elongation factor Tu family protein sim...    74   5e-14
At1g06220.1 68414.m00655 elongation factor Tu family protein sim...    74   5e-14
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    51   3e-07
At3g63180.1 68416.m07097 expressed protein                             28   2.3  
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    27   4.0  
At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein sim...    27   4.0  
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    27   4.0  
At5g41320.1 68418.m05022 expressed protein                             27   6.9  

>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score = 77.0 bits (181), Expect = 5e-15
 Identities = 30/46 (65%), Positives = 39/46 (84%)
 Frame = -2

Query: 391 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
           TP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW+++  DP
Sbjct: 764 TPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQCVFDHWEMMSSDP 809



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 257 PCEPQSKPYNVVQETRKRKGLKEGL 183
           P EP ++   +V + RKRKGLKE +
Sbjct: 809 PLEPGTQASVLVADIRKRKGLKEAM 833


>At5g25230.1 68418.m02991 elongation factor Tu family protein
            translation Elongation Factor 2, Schizosaccharomyces
            pombe, PIR:T39902
          Length = 973

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            VP   TP +IVKA+LPV ESFGF  DLR +T GQAF   VFDHW ++PGDP
Sbjct: 861  VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 911


>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            VP   TP +IVKA+LPV ESFGF  DLR +T GQAF   VFDHW ++PGDP
Sbjct: 875  VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 925


>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = -2

Query: 406  VPGGRTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            VP   TP +IVKA+LPV ESFGF  DLR +T GQAF   VFDHW ++PGDP
Sbjct: 875  VPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDP 925


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = -2

Query: 385  MFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 254
            +F V AY+PV+ESFGF  +LR  T G A    V  HW++L  DP
Sbjct: 915  LFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDP 958


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 369 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETLRTSEQA 235
           P ++  +   L P+ VP+ + RP++S +  +G +S      S  A
Sbjct: 539 PAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLASANFSHPSSSA 583


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 379 IVKAYLPVNESFGFTADLRSNTGGQ 305
           ++ A +P+N  FG++  LRS T G+
Sbjct: 698 VITANVPLNNMFGYSTSLRSMTQGK 722


>At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein
           similar to SP|P53370 Nucleoside diphosphate-linked
           moiety X motif 6 {Homo sapiens}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 215

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 352 ESFGFTADLRSN-TGGQAFPQCVFDHWQVLPGDPANLRASP-TTLYRK 215
           E  GF+  L  N TG +++  C  DH   L G P +   S  TTL RK
Sbjct: 164 EYLGFSNVLTKNSTGKESYLYCSTDHAYFLKGKPDHSSTSLFTTLLRK 211


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 379 IVKAYLPVNESFGFTADLRSNTGGQ 305
           ++ A +P+N  FG++  LRS T G+
Sbjct: 698 VITANVPLNNMFGYSTSLRSMTQGK 722


>At5g41320.1 68418.m05022 expressed protein 
          Length = 515

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 327 CVPTPADRPSRSAYSTIGRSSLETLRTSEQAL--QRCTGNEKEERIEGR 187
           C   P DR   S  S +GR+  +  + S++AL  Q    N K E ++G+
Sbjct: 253 CNGGPLDRFLHSGQSGLGRNYFQQQQESQEALVAQTEMDNSKNETVKGQ 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,701
Number of Sequences: 28952
Number of extensions: 183533
Number of successful extensions: 520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)