BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0801.Seq (438 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 97 2e-19 UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 94 1e-18 UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 86 3e-16 UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 86 4e-16 UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 85 8e-16 UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 64 1e-09 UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 52 4e-06 UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 52 4e-06 UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 1e-05 UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 44 0.001 UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 39 0.054 UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 37 0.22 UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 2.7 UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 33 2.7 UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 6.2 >UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens (Human) Length = 148 Score = 96.7 bits (230), Expect = 2e-19 Identities = 40/75 (53%), Positives = 51/75 (68%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210 M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60 Query: 211 FHFRKNKNFCPVLNL 255 +H ++N++FCP +NL Sbjct: 61 YHLKRNQSFCPTVNL 75 Score = 57.6 bits (133), Expect = 1e-07 Identities = 28/64 (43%), Positives = 37/64 (57%) Frame = +3 Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389 + L + Q F + LDKLWTLVSEQTR+ A G P+I++V++ PKQ Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120 Query: 390 PVIV 401 PVIV Sbjct: 121 PVIV 124 >UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Eukaryota|Rep: 60S ribosomal protein L27a-2 - Arabidopsis thaliana (Mouse-ear cress) Length = 146 Score = 94.3 bits (224), Expect = 1e-18 Identities = 43/75 (57%), Positives = 48/75 (64%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210 MAT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60 Query: 211 FHFRKNKNFCPVLNL 255 FH +NK FCP++NL Sbjct: 61 FHKLRNKFFCPIVNL 75 >UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ostreococcus|Rep: 60s ribosomal protein L15/L27 - Ostreococcus tauri Length = 198 Score = 86.2 bits (204), Expect = 3e-16 Identities = 38/73 (52%), Positives = 44/73 (60%) Frame = +1 Query: 37 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 216 T K RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113 Query: 217 FRKNKNFCPVLNL 255 KN+ CP +N+ Sbjct: 114 KLKNQTVCPTINI 126 Score = 33.9 bits (74), Expect = 1.5 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = +3 Query: 222 KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 401 K Q + +DKLWTLV + R + A + PVI++ P QPV+V Sbjct: 116 KNQTVCPTINIDKLWTLVGTEKREECAK-NTSQAPVIDLTDHGIFKLLGKGQLPNQPVVV 174 >UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|Rep: Ribosomal protein L27a - Ascaris suum (Pig roundworm) (Ascaris lumbricoides) Length = 133 Score = 85.8 bits (203), Expect = 4e-16 Identities = 33/42 (78%), Positives = 37/42 (88%) Frame = +1 Query: 130 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNL 255 NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NL Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNL 61 Score = 54.4 bits (125), Expect = 1e-06 Identities = 30/64 (46%), Positives = 37/64 (57%) Frame = +3 Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389 F + K + + LDKLW+LVSE+TR YA D K PVI++VKA PKQ Sbjct: 47 FHVRKNGLYCPTVNLDKLWSLVSEKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQ 105 Query: 390 PVIV 401 PVIV Sbjct: 106 PVIV 109 >UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena thermophila Length = 149 Score = 84.6 bits (200), Expect = 8e-16 Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGM 204 M + KKTRKLRGHVS AGG HHHRI M+K+HPGY+GKLGM Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60 Query: 205 RNFHFRKNKNFCPVLNL 255 R FH +KN CPV+N+ Sbjct: 61 RTFHLKKNPLHCPVVNI 77 Score = 47.2 bits (107), Expect = 2e-04 Identities = 24/50 (48%), Positives = 30/50 (60%) Frame = +3 Query: 252 LDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 401 +DKLW+LVS+ TR KYA KVPVI++ KA P QPV+V Sbjct: 77 IDKLWSLVSDATRQKYAE-DKKKVPVIDVTKAGFFKVLGKGRLPNQPVVV 125 >UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia theta (Cryptomonas phi) Length = 144 Score = 64.1 bits (149), Expect = 1e-09 Identities = 30/75 (40%), Positives = 40/75 (53%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210 M T +++RK RGHVS N+GG+HHH+I +KYH +FGK GMR Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60 Query: 211 FHFRKNKNFCPVLNL 255 + K NF +NL Sbjct: 61 YRKLKQNNFNKSINL 75 >UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; Ustilago maydis|Rep: Putative uncharacterized protein - Ustilago maydis (Smut fungus) Length = 187 Score = 52.4 bits (120), Expect = 4e-06 Identities = 25/50 (50%), Positives = 26/50 (52%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 180 M T KTRK RGHVS AGG+HHHR NMDKYHP Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50 Score = 40.7 bits (91), Expect = 0.013 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +1 Query: 139 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNL 255 G ++ + YFGK+GMR+FH +N +F PV+NL Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNL 115 Score = 34.7 bits (76), Expect = 0.87 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +3 Query: 210 FPL*KEQEFLSSFELDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 389 F L + F LDKLWTLV + R K +A +VPVI+ + A P Sbjct: 101 FHLTRNSSFRPVVNLDKLWTLVPAEQR-KGLTADSTEVPVIDTLAAGYGKVLGKGRLPAL 159 Query: 390 PVIV 401 P IV Sbjct: 160 PCIV 163 >UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a - Encephalitozoon cuniculi Length = 147 Score = 52.4 bits (120), Expect = 4e-06 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210 M KKTRKLRGHVS AGG H + ++HP Y GK GMR Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60 Query: 211 FHFRKNKNF 237 +H ++N ++ Sbjct: 61 YHRKENSDY 69 >UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella natans|Rep: Ribosomal protein L27a - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 151 Score = 50.8 bits (116), Expect = 1e-05 Identities = 24/68 (35%), Positives = 33/68 (48%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 210 M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60 Query: 211 FHFRKNKN 234 ++ K N Sbjct: 61 YNLEKTLN 68 >UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole genome shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome chr12 scaffold_159, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 151 Score = 44.0 bits (99), Expect = 0.001 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = +1 Query: 166 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNL 255 DK+HPG FGK+GMR+FH + K CP++++ Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHI 57 >UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED: similar to 60S ribosomal protein L27a - Rattus norvegicus Length = 86 Score = 38.7 bits (86), Expect = 0.054 Identities = 21/51 (41%), Positives = 24/51 (47%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 183 M+ +KTRK +GHVS NAGGEH HRIN PG Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51 >UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C; n=2; Saccharomycetaceae|Rep: Putative uncharacterized protein YGL102C - Saccharomyces cerevisiae (Baker's yeast) Length = 142 Score = 36.7 bits (81), Expect = 0.22 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = -1 Query: 255 QVQNWTEILVLSKVEISHTKFAKVSRMVLVHVDXXXXXXXXXXXXXXXXXVLSDTTMS 82 QVQ+W + L VE+SHT +++ MV +HV+ VL+DTT + Sbjct: 78 QVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTTFT 135 >UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse transcriptase; n=1; Arabidopsis thaliana|Rep: Putative non-LTR retroelement reverse transcriptase - Arabidopsis thaliana (Mouse-ear cress) Length = 1044 Score = 33.1 bits (72), Expect = 2.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 165 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 254 GQ+P WILW W + L EQ+ +SS +L Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871 >UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress) Length = 104 Score = 33.1 bits (72), Expect = 2.7 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +1 Query: 31 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 204 M TS+KKTR LR HVS H R + PG G +GM Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39 Query: 205 RNFHFRKNKNFCPVLNL 255 R FH +NK +C ++NL Sbjct: 40 RYFHKLRNKFYCQIVNL 56 >UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis Length = 306 Score = 31.9 bits (69), Expect = 6.2 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -3 Query: 238 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 101 R+SC + F +C+S T PC D H +H DL+D GA Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 409,602,504 Number of Sequences: 1657284 Number of extensions: 7781004 Number of successful extensions: 19416 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 18790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19398 length of database: 575,637,011 effective HSP length: 93 effective length of database: 421,509,599 effective search space used: 21918499148 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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