Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0800.Seq
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    31   0.006
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    31   0.006
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.9  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   6.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 0.006
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 43  KHYGSNKRPNHVLSDGHVEVAEGTIYGLLGASGCGKTTLLSCI 171
           K   S  +  H+L +       G +  +LG+SG GKTTLL+ +
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 0.006
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 43  KHYGSNKRPNHVLSDGHVEVAEGTIYGLLGASGCGKTTLLSCI 171
           K   S  +  H+L +       G +  +LG+SG GKTTLL+ +
Sbjct: 82  KRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTL 124


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 220 KPGTKGSGVPGN 255
           KPGT  SG PGN
Sbjct: 228 KPGTPPSGEPGN 239


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = +3

Query: 144 WEDHASVLH---RGQTEIK 191
           WEDH +V H    GQ E +
Sbjct: 309 WEDHLAVKHFSVEGQLEFR 327


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 173  TMQDRSVVFPQPDAPSRP 120
            T+   +VV P+ D PS+P
Sbjct: 1085 TIPPPAVVMPEVDKPSQP 1102


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 161 CLASWADGN*TAARYGCSEG 220
           C   W   N  A+RY CS G
Sbjct: 108 CDVFWNCWNGEASRYQCSPG 127


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 161 CLASWADGN*TAARYGCSEG 220
           C   W   N  A+RY CS G
Sbjct: 108 CDVFWNCWNGEASRYQCSPG 127


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 388  FWTCPARTEW 417
            +W  PAR EW
Sbjct: 1015 YWKPPAREEW 1024


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 146 PQPDAPSRPYMVPS 105
           P P  PS PY V S
Sbjct: 119 PSPGPPSHPYTVIS 132


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -1

Query: 251 PGTPDPFVPGFP----PSTHISPLFN 186
           P +P+P+ P  P    PS   SP+ N
Sbjct: 23  PHSPEPYPPRCPPIYEPSCQYSPVSN 48


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 111 HHIRSTWCVGLWEDHASVLHRGQTEIKQRRDM 206
           H +RS   V L ++   ++HRG  +    RD+
Sbjct: 63  HFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDL 94


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 300  TIKETMMYFGWIFGMET 350
            T+K+  ++  W FG++T
Sbjct: 1287 TLKKDYLHIKWPFGVKT 1303


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 300  TIKETMMYFGWIFGMET 350
            T+K+  ++  W FG++T
Sbjct: 1287 TLKKDYLHIKWPFGVKT 1303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,813
Number of Sequences: 336
Number of extensions: 2418
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)