Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0800.Seq
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   1.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 49  YGSNKRPNHVLSDGHVEV 102
           YGSNK+  H+L  G  +V
Sbjct: 59  YGSNKKTRHMLPTGFRKV 76


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 237 VWCPRERVGYMPQEIALYG 293
           VWC   R  Y+PQ + + G
Sbjct: 457 VWCWDTRKEYIPQNLGVIG 475


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 GDHDVLRLDLRHGDXGDRGSSSVPARLSGPA 400
           G+HD LRL  R G+   R  +++   L G A
Sbjct: 345 GNHDQLRLVSRFGEEKARMITTMSLLLPGVA 375


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 GDHDVLRLDLRHGDXGDRGSSSVPARLSGPA 400
           G+HD LRL  R G+   R  +++   L G A
Sbjct: 345 GNHDQLRLVSRFGEEKARMITTMSLLLPGVA 375


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 186 IKQRRDMGARREAWNKRVWCPR-ERVGYMPQEI 281
           +K R+D+GA  +   K+++  R E V  +  +I
Sbjct: 247 VKMRQDLGASLDTQFKKIYMSRHENVSILYADI 279


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 287 QSYLLRHVADAFPG 246
           Q Y LRH  D  PG
Sbjct: 135 QKYRLRHKGDGSPG 148


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 287 QSYLLRHVADAFPG 246
           Q Y LRH  D  PG
Sbjct: 135 QKYRLRHKGDGSPG 148


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 142 CGKTTLLSCIVGRRKLNSGEIWVLGGKPG 228
           C  + LLS +    +LN   ++++ G  G
Sbjct: 58  CDMSPLLSLVCADTRLNKLAVFIVAGAVG 86


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 72  VGPFVRPVMFEGVPHADCLLS 10
           +G F    +F+G+ +A C+LS
Sbjct: 88  LGVFKIAPIFKGIGYATCVLS 108


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 72  VGPFVRPVMFEGVPHADCLLS 10
           +G F    +F+G+ +A C+LS
Sbjct: 141 LGVFKIAPIFKGIGYATCVLS 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,965
Number of Sequences: 438
Number of extensions: 2857
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)