Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0799.Seq
         (436 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    80   2e-14
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.023
UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subuni...    36   0.37 
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   1.1  
UniRef50_UPI00006CB37C Cluster: hypothetical protein TTHERM_0065...    32   4.6  
UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4; Xy...    31   8.0  
UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2; ...    31   8.0  
UniRef50_A7RJY9 Cluster: Predicted protein; n=1; Nematostella ve...    31   8.0  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 79.8 bits (188), Expect = 2e-14
 Identities = 44/74 (59%), Positives = 48/74 (64%)
 Frame = -3

Query: 233 GAPTARRTNATTSFLTATILVYXXXXXXXXXXXTRLALQLFLVKIFKVYSFRLRGLVRVP 54
           G P AR  + TTSFLTA  L+Y           TRLALQ  LVK FKV SF+L+GL RV 
Sbjct: 30  GGPPARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVL 89

Query: 53  YRYFSSLPPRAGSG 12
           Y YFSSLPPR GSG
Sbjct: 90  YCYFSSLPPRVGSG 103


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
          n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
          protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.023
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -2

Query: 69 PRKSPVSLFFVTTSPCREW 13
          PRKSPV LFFVTTSP REW
Sbjct: 24 PRKSPVLLFFVTTSPGREW 42


>UniRef50_A1VP16 Cluster: Peptidase C14, caspase catalytic subunit
           p20; n=1; Polaromonas naphthalenivorans CJ2|Rep:
           Peptidase C14, caspase catalytic subunit p20 -
           Polaromonas naphthalenivorans (strain CJ2)
          Length = 562

 Score = 35.9 bits (79), Expect = 0.37
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 318 RILILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWS 157
           R++   ++F          R ++  PR+R  D AA + NY L NR+N+ +  W+
Sbjct: 142 RVMSFQKKFKSPEFAAQYDRPVNAPPRVRAADPAAVQANY-LANRSNYEVSQWT 194


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 159 SWNYRGCWHQTCP 121
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_UPI00006CB37C Cluster: hypothetical protein
           TTHERM_00657640; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00657640 - Tetrahymena
           thermophila SB210
          Length = 604

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -2

Query: 339 LTEEHXDRILILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW 160
           + +++ ++I ++ R+       +  ++K    P+++  D   +K N    N NNF I+Y 
Sbjct: 194 INQKNSNQIEVIKRKQTRGMQNNQFMQKFDEIPKLKIDDLNLNKKNQTSINNNNFQIQYI 253

Query: 159 S 157
           S
Sbjct: 254 S 254


>UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4;
           Xylella fastidiosa|Rep: Putative DNA topoisomerase III -
           Xylella fastidiosa Ann-1
          Length = 193

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +1

Query: 4   ANYPLPARGGSDEK*--RYG---TLTRPRNRNEYTLNILTRNNWR 123
           AN  + ++ G D K    +G   T+   + RN Y LN++TRN WR
Sbjct: 30  ANQNMKSKTGDDSKITAHHGIILTILSEKERNIYDLNVVTRNGWR 74


>UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2;
           Mycobacterium avium|Rep: Putative uncharacterized
           protein - Mycobacterium avium (strain 104)
          Length = 380

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 213 HKCNYELFNRNNFSIRYWSWN 151
           H C YE+F++    +R+W+WN
Sbjct: 159 HNCYYEIFDQLGPQLRWWAWN 179


>UniRef50_A7RJY9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 237

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -2

Query: 384 EHXNLFKVNCRPTSTLTEEHXDRILILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKC 205
           +H    +V  R TS +      R+       ++ R T  +  + + S + RCT S  H+C
Sbjct: 89  KHRCTSRVKHRCTSRVKHRCTSRVKHRCTSRVKHRCTSRVKHRCTSSGKHRCTSSVKHRC 148

Query: 204 NYELFNRNNFSIRY 163
              + +R   S++Y
Sbjct: 149 TSSVKHRCTSSVKY 162



 Score = 31.5 bits (68), Expect = 8.0
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -2

Query: 393 ARFEHXNLFKVNCRPTSTLTEEHXDRILILNRRFLERRLTDDMLRKLSVSPRMRCTDSAA 214
           +R +H    +V  R TS +      R+       ++ R T     + + S + RCT S  
Sbjct: 94  SRVKHRCTSRVKHRCTSRVKHRCTSRVKHRCTSRVKHRCTSSGKHRCTSSVKHRCTSSVK 153

Query: 213 HKCNYELFNRNNFSIRY 163
           H+C   +  R   S++Y
Sbjct: 154 HRCTSSVKYRCTSSVKY 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,258,136
Number of Sequences: 1657284
Number of extensions: 7245150
Number of successful extensions: 14722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14700
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)