Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0799.Seq
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   0.94 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.9  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.8  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 418 TKYSSSIFSPL*AL*FVQSKLSAHLDTHRRAPR*DFD 308
           T + + I SPL      Q+ LS H+ TH  AP   FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 87  LIPITRPRKSPVSLFFVTTSPCREWVICA 1
           +IPI +  KS +SL F+T SPC  + IC+
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICS 70


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 303 NRRFLERRLTDDMLRKLSVSPR-MRCTDSAAHKCNYELFNRNNFSIRYWSWNYR 145
           NR  +  RL        S + R +R    AA KC +E      FSI + S+N++
Sbjct: 44  NRILIAVRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,971
Number of Sequences: 5004
Number of extensions: 28382
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)