Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0799.Seq
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   9e-04
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.006
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 30   0.95 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.95 
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   1.3  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   2.2  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_58376| Best HMM Match : M20_dimer (HMM E-Value=0.00027)             27   8.8  
SB_5720| Best HMM Match : DUF528 (HMM E-Value=1.6)                     27   8.8  

>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +1

Query: 58  TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 234
           T  +   R    ++++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +1

Query: 109 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 234
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +1

Query: 121 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 234
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -2

Query: 417  RNIQAAFLARFEHXNLFKVNCRPTSTLTEEHXDRILILNRRFLERRLTDDMLRKLSVSPR 238
            RNI A  L+R +   LF  NC  T T T+E  D +L+  +   + R        L+V  +
Sbjct: 1482 RNIDADSLSRLKDIRLFMENC--TETATKEAIDSMLVAAQ--AQHRGDVVQFNSLTVDEQ 1537

Query: 237  MRCTDSAAHKCNYELF 190
            +     A H   Y  +
Sbjct: 1538 LGAFLLAVHAAQYRTY 1553


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +1

Query: 109 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 234
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 YTKIVAVKKLVVAFVRRAVGAP 234
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 YTKIVAVKKLVVAFVRRAVGAP 234
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 YTKIVAVKKLVVAFVRRAVGAP 234
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 207 CNYELFNRNNFSIRYWSWNYRGCWH 133
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 246 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 148
           S R+RCT S + KC     + + F    W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 115 CSSLKYLKCTHSDYEAS*ESRIVIFRHYL 29
           CS L YL+C          +R+++F H L
Sbjct: 528 CSILSYLRCNKPPVTIRWRTRLIVFTHLL 556


>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 300 RRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRG-CWH 133
           + + E +LTD  +R  S+   +   D+  H  NYE  N        W  ++RG  WH
Sbjct: 122 QHYWEIKLTD--VRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQESWGLSHRGEIWH 176


>SB_58376| Best HMM Match : M20_dimer (HMM E-Value=0.00027)
          Length = 517

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 270 DMLRKLSVSPRMRCTDSAAHKCNYELFNRNNFSI-RYWS 157
           D+ RK+  +P + C +  AHK   +      F + R W+
Sbjct: 64  DLNRKIWENPELSCNEKFAHKVLTDFLEEKGFDVTRSWA 102


>SB_5720| Best HMM Match : DUF528 (HMM E-Value=1.6)
          Length = 151

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 270 DMLRKLSVSPRMRCTDSAAHKCNYELFNRNNFSI-RYWS 157
           D+ RK+  +P + C +  AHK   +      F + R W+
Sbjct: 64  DLNRKIWENPELSCNEKFAHKVLTDFLEEKGFDVTRSWA 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,543
Number of Sequences: 59808
Number of extensions: 241892
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)