Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0799.Seq
         (436 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    25   1.5  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   1.5  
AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding pr...    23   4.7  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 303 NRRFLERRLTD--DMLRKLSVSPRMRCTDSAAHKCNYELFNRNN 178
           NR  +  ++ D  D +RK++ + R     S A+   Y +++RNN
Sbjct: 322 NRIIITPKINDAADQIRKVAQAQRQCVFASEANLSYYSVYSRNN 365


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 303 NRRFLERRLTD--DMLRKLSVSPRMRCTDSAAHKCNYELFNRNN 178
           NR  +  ++ D  D +RK++ + R     S A+   Y +++RNN
Sbjct: 322 NRIIITPKINDAADQIRKVAQAQRQCVFASEANLSYYSVYSRNN 365


>AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP29 protein.
          Length = 176

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 216 PRCRCTASAVILTVCGA 266
           P+ RC + AV + +CGA
Sbjct: 6   PQKRCVSRAVTVGICGA 22


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,452
Number of Sequences: 2352
Number of extensions: 7884
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36142935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)