Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0799.Seq
         (436 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting pro...    30   4.0  
BC005212-1|AAH05212.1|  316|Homo sapiens NSMCE4A protein protein.      29   6.9  
AL731566-5|CAI14817.1|  316|Homo sapiens non-SMC element 4 homol...    29   6.9  
AL121895-16|CAM14447.1|  398|Homo sapiens chromosome 20 open rea...    29   6.9  
AF258584-1|AAG23787.1|  157|Homo sapiens PP4762 protein.               29   6.9  
AK092641-1|BAC03932.1|  170|Homo sapiens protein ( Homo sapiens ...    29   9.1  

>AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 255 LSVSPRMRCTDSAAHKCNYELFNRNNF 175
           L++ PR++C+ +    CN+EL   +NF
Sbjct: 12  LALLPRLKCSGAIIAHCNFELLGSSNF 38


>BC005212-1|AAH05212.1|  316|Homo sapiens NSMCE4A protein protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 336 TEEHXDRIL-ILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNN 178
           TE+  +RIL +L   F E R        L++SPR+ C+ + +  CN  L + +N
Sbjct: 263 TEKEVERILGLLQTYFREDR------DSLTLSPRLECSGTISTHCNLHLLDSSN 310


>AL731566-5|CAI14817.1|  316|Homo sapiens non-SMC element 4 homolog
           A (S. cerevisiae) protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 336 TEEHXDRIL-ILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNN 178
           TE+  +RIL +L   F E R        L++SPR+ C+ + +  CN  L + +N
Sbjct: 263 TEKEVERILGLLQTYFREDR------DSLTLSPRLECSGTISTHCNLHLLDSSN 310


>AL121895-16|CAM14447.1|  398|Homo sapiens chromosome 20 open
           reading frame 4 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 279 LTDDMLRK-LSVSPRMRCTDSAAHKCNYEL 193
           LT  + R+ L+VSPR++C+D    +C+ EL
Sbjct: 324 LTSTLQRQSLAVSPRLKCSDLIIARCSLEL 353


>AF258584-1|AAG23787.1|  157|Homo sapiens PP4762 protein.
          Length = 157

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 336 TEEHXDRIL-ILNRRFLERRLTDDMLRKLSVSPRMRCTDSAAHKCNYELFNRNN 178
           TE+  +RIL +L   F E R        L++SPR+ C+ + +  CN  L + +N
Sbjct: 104 TEKEVERILGLLQTYFREDR------DSLTLSPRLECSGTISTHCNLHLLDSSN 151


>AK092641-1|BAC03932.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35322 fis, clone PROST2012157. ).
          Length = 170

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 267 MLRKLSVSPRMRCTDSAAHKCNYEL-FNRNNFSIRYWSWNYRGCWH 133
           M + LS+SPR+ C+ + +  CN  L  + N+ +  YW     G  H
Sbjct: 107 MRQSLSLSPRLECSGTISAHCNLCLPCSSNSPTSAYWVAGTTGVHH 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,797,499
Number of Sequences: 237096
Number of extensions: 1116358
Number of successful extensions: 1827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)