Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0798.Seq
         (433 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.31 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.31 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   6.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   8.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 324 QADHPRQVQRHHQVAGFQPAGRQEEYEHKQ 235
           Q  HP+  Q HHQ       G+Q    H+Q
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQGANMHQQ 201


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 324 QADHPRQVQRHHQVAGFQPAGRQEEYEHKQ 235
           Q  HP+  Q HHQ       G+Q    H+Q
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQGANMHQQ 203


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 380 SMKSTMEDEKLKEKISDSD 324
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 137 PEPEVPPPGLEALAPPS 87
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 327 RVRDLFLELLIL 362
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -3

Query: 119 PPGLEALAPPSRRSIKPTFHTTLKP 45
           PP  E L  P     +    TTL P
Sbjct: 108 PPNSEPLVSPKSEKEEKDMETTLTP 132


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -3

Query: 137 PEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 18
           P+ E+P P   +     + S+ PT   T  P     L  S
Sbjct: 73  PKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPS 112


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 95  PPSRRSIKPTFHTTLKPTCNNHL 27
           PP    I+P      +P CN  L
Sbjct: 95  PPIHHQIRPPILHDTQPMCNPQL 117


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 188 RVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRS 78
           RVP+       +S +  PEP  P    + +   SR+S
Sbjct: 275 RVPQHQVLQSPSSTSSSPEPRSPESLFKPVTVISRQS 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,611
Number of Sequences: 336
Number of extensions: 2083
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)