SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0798.Seq
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    65   5e-12
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    60   1e-10
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    52   5e-08
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    31   0.100
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    25   0.14 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    27   0.93 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   0.93 
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   1.6  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    26   2.2  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   3.8  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   3.8  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   5.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   5.0  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   5.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.6  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   6.6  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    24   8.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   8.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   8.7  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 64.9 bits (151), Expect = 5e-12
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = -3

Query: 416 IQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKRSMSTS 237
           IQAKN LESY +S++++++D  LK+K+  SDK+T+     +TI+WLDSN  A K      
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAK 593

Query: 236 RK 231
           +K
Sbjct: 594 QK 595



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -2

Query: 258 QEEYEHKQKELEGIYNPIITKMYQ 187
           ++E+E KQKELE + NPI+ K+YQ
Sbjct: 587 KDEFEAKQKELESVANPIMAKIYQ 610


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 27/62 (43%), Positives = 40/62 (64%)
 Frame = -3

Query: 416 IQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKRSMSTS 237
           IQAKN LESY +S++++++D  LK+K+  SDK+ I     +TI+WLD N  A K      
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDK 593

Query: 236 RK 231
           +K
Sbjct: 594 QK 595



 Score = 40.7 bits (91), Expect = 9e-05
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = -2

Query: 258 QEEYEHKQKELEGIYNPIITKMYQ 187
           ++EYE KQKELEG+ NPI+ K+YQ
Sbjct: 587 KDEYEDKQKELEGVANPIMAKIYQ 610


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 51.6 bits (118), Expect = 5e-08
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -3

Query: 425 KETIQAKNALESYCFSMKSTMED-EKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADKR 252
           KE I+A+N LE+Y +S+K   +D E+L  K+   DKQ +LD   D  +WL+   + A K 
Sbjct: 561 KERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKE 620

Query: 251 SMSTSRKNWKA 219
                R+   A
Sbjct: 621 EFEDQRQKLDA 631



 Score = 25.8 bits (54), Expect = 2.8
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 258 QEEYEHKQKELEGIYNPIITKMY 190
           +EE+E ++++L+ + +PI  K+Y
Sbjct: 619 KEEFEDQRQKLDAVVHPITQKLY 641


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 30.7 bits (66), Expect = 0.100
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 291 HQVAGFQPAGRQEEYEHKQKEL 226
           H + GFQP+ RQE+Y+H   +L
Sbjct: 290 HHLNGFQPSQRQEDYKHTMVDL 311


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.0 bits (52), Expect(2) = 0.14
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 431 KQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADK 255
           +++  + A  AL       +   E+      I   +K T+ D+ NDT +WLD  +L DK
Sbjct: 184 REELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLGDK 239



 Score = 23.8 bits (49), Expect(2) = 0.14
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 188 RVPEESPEVCRASRAEHPEPEVP 120
           ++ ++ P   RASRA   EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -3

Query: 431 KQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADK 255
           ++ ETI Q +  +E     ++S +E+E +KE  +    +    + +  + + D   + + 
Sbjct: 509 EKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQNENQHKRSSRKLLYEDKQAIQEA 567

Query: 254 RSMSTSRKNWKAFTI 210
            +++T RK W   T+
Sbjct: 568 HTINTKRKLWPQSTL 582


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
            homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
 Frame = -3

Query: 431  KQKETIQAKNALESYCFSMKSTMED----EKLKEKISDSDKQTILDKCND-TIKWLDSNQ 267
            K  +T++A N   S     K    +    EK++EK+++ DK ++ D   D  IK   ++ 
Sbjct: 761  KNNQTVEAVNTETSDKLQEKEANHELENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSV 820

Query: 266  LADKRSMS--TSRKNWKAFTIR*LRRCTRVPEESPEVCRASRA---EHPEPEVPPPGLEA 102
                RS+S  T  K  K   I  + +  +  E SP  C  S A    + E EV    L +
Sbjct: 821  QNGTRSVSKNTPEKETKVDKIDNVSK--KDVETSPGSCETSSAFAKTYAEKEVTSINLPS 878

Query: 101  LAPPSRRSIKPTFHTTLKPTCNN 33
            +  P   S      +   P C +
Sbjct: 879  VRKPLDESYYDHSISPFDPLCQS 901


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 422 ETIQAKNALESYCFSMKSTMED 357
           ET+  KNALE Y +  ++ ++D
Sbjct: 575 ETVDRKNALEEYIYDTRAKLDD 596


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 179 EESPEVCRASRAEHPEPE 126
           EE+P    AS  EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 354 EAQGKDL*L*QADHPRQVQRHHQVAG-FQPAGRQEEYEHKQKELEGIYNPIITKMY 190
           E  GKD  +   DH  +      + G FQ AG+      +   L+G+Y+ IITK+Y
Sbjct: 239 ELGGKDPCILTDDHRLEEILSIVMRGVFQSAGQNCIGIERIIALDGVYDTIITKLY 294


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 407 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKW 282
           K   E YC S+ ST +  + K  +SD    T+L     T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 365 MEDEKLKEKISDSDKQTILDKCNDTIKWL 279
           +++++++ K+S  D    L+ CN+ +  L
Sbjct: 260 LKEQEIRRKVSSDDVHNYLESCNNHLSML 288


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 185  VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 78
            V  +SP   R   SR   P  E   P   A  PPSRR+
Sbjct: 891  VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 425 KETIQAKNALESYCFSMKST 366
           K+TI  KNA++ Y  S+K T
Sbjct: 260 KQTILTKNAIQDYLVSLKIT 279


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 140 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 18
           H    +P     +L+PPS R++KP  H+   P+  + L  S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 380 SMKSTMEDEKLKEKISD 330
           S+K  MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 107 EALAPPSRRSIKPTFH 60
           + L P  +RSIKP FH
Sbjct: 142 QTLIPSQQRSIKPPFH 157


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 356 EKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKRSMSTSRKNWKAFTI 210
           +K+ E+ +D    +ILD C++ I     NQ+ +  S   S    K   I
Sbjct: 139 DKVNERSTDDLTSSILDACDEEILVDARNQIKNWLSSELSHSTSKYLNI 187


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 137 PEPEVPPPGLEALAPP 90
           P P  PPPG+    PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,826
Number of Sequences: 5004
Number of extensions: 31139
Number of successful extensions: 147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -