Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0798.Seq
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.27 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   5.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   5.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   5.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   5.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 182 PEESPEVCRASRAEHPEP-EVPPPGLEALAPPSR 84
           P +SP+     R   P P + PPPG    APPS+
Sbjct: 27  PHQSPQA--PQRGSPPNPSQGPPPGGPPGAPPSQ 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 374 KSTMEDEKLKEKISDSDKQTILDKCN 297
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 261 RQEEYEHKQKELEGIYN 211
           R  EY  K ++ E +YN
Sbjct: 8   RNREYRKKDRQYEKLYN 24


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 261 RQEEYEHKQKELEGIYN 211
           R  EY  K ++ E +YN
Sbjct: 8   RNREYRKKDRQYEKLYN 24


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 261 RQEEYEHKQKELEGIYN 211
           R  EY  K ++ E +YN
Sbjct: 8   RNREYRKKDRQYEKLYN 24


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 261 RQEEYEHKQKELEGIYN 211
           R  EY  K ++ E +YN
Sbjct: 8   RNREYRKKDRQYEKLYN 24


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 261 RQEEYEHKQKELEGIYN 211
           R  EY+ K +  E +YN
Sbjct: 8   RNREYKEKDRRYEKLYN 24


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 318 DHPRQVQRHHQVAGFQPAGRQEEYEHKQK 232
           +HP Q Q+H+  A   P   Q   +  Q+
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQSVQQQSQQ 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,611
Number of Sequences: 438
Number of extensions: 2540
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)