Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    74   8e-15
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.2  
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   3.8  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   3.8  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    25   5.0  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    24   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 74.1 bits (174), Expect = 8e-15
 Identities = 36/69 (52%), Positives = 46/69 (66%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  K  +YIR+QR++ +L   LKVPP I QF +TLDK  A  +FK+L KYRPET A  
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEK 105

Query: 410 KERLXKAAE 436
           K+RL   AE
Sbjct: 106 KQRLVAEAE 114



 Score = 54.4 bits (125), Expect = 7e-09
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLF  RP++F IGQ IQP RDLSRFV+WP
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWP 53


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 278 KAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILE 379
           KAVL   LK  P IN F + L       +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 269 GCGYTGPSYKSGQVTSWLNALTNSKVLWPLLKERIHNFLGLNL 141
           GCG         +     N L   +++  +LKE I N  GLNL
Sbjct: 57  GCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNL 99


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 257 TGPSYKSGQVTSWLNALTNSKVLWPLLKERIHNFLGLNLFDHQ 129
           TGP Y S Q     ++LTNS V    ++ER HN  G +    Q
Sbjct: 330 TGPLYHSPQ-----SSLTNSSVASADVQERTHNTNGASPIQDQ 367


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 169 GFTIFLGSTFLTTNGAAATFFPTFFL 92
           GFT+F+G TF   N  AA      FL
Sbjct: 472 GFTVFVGHTFTAGNFIAAYITLPIFL 497


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 278 SDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLKERIHNFLGLN 144
           S AG G+    + +GQ+  + N  ++ KV+ PL+   I +++GL+
Sbjct: 166 SFAGLGFLA-IFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGLS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,113
Number of Sequences: 5004
Number of extensions: 23584
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)