BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0797.Seq (436 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 79 1e-15 08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 1e-15 01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 52 2e-07 10_08_0723 + 20111974-20112705 27 5.0 06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 27 6.6 05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 8.7 >09_04_0677 - 19388888-19389019,19389124-19389216,19389317-19389445, 19389559-19389728,19390280-19390481,19390576-19390623, 19390797-19390799 Length = 258 Score = 79.4 bits (187), Expect = 1e-15 Identities = 38/69 (55%), Positives = 49/69 (71%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 L + K + +RIQRQ+ +L + LKVPP +NQFT+TLDK A LFK+L KYRPE +A Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAK 103 Query: 410 KERLXKAAE 436 KERL K A+ Sbjct: 104 KERLLKRAQ 112 Score = 52.4 bits (120), Expect = 2e-07 Identities = 20/32 (62%), Positives = 24/32 (75%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260 NPLFEKRPK F IG + P +DL RFV+WP + Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53 >08_02_0211 - 14333553-14333684,14333795-14333887,14334019-14334105, 14334220-14334389,14334985-14335186,14335604-14335606 Length = 228 Score = 79.4 bits (187), Expect = 1e-15 Identities = 38/69 (55%), Positives = 49/69 (71%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 L + K + +RIQRQ+ +L + LKVPP +NQFT+TLDK A LFK+L KYRPE +A Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAK 87 Query: 410 KERLXKAAE 436 KERL K A+ Sbjct: 88 KERLLKRAQ 96 Score = 52.4 bits (120), Expect = 2e-07 Identities = 20/32 (62%), Positives = 24/32 (75%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260 NPLFEKRPK F IG + P +DL RFV+WP + Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37 >01_07_0018 - 40488702-40488833,40488928-40489020,40489125-40489253, 40489379-40489500,40490292-40490544,40490636-40490638 Length = 243 Score = 52.4 bits (120), Expect = 2e-07 Identities = 21/30 (70%), Positives = 23/30 (76%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKRPK F IG + P +DL RFVRWP Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52 Score = 51.2 bits (117), Expect = 4e-07 Identities = 24/52 (46%), Positives = 34/52 (65%) Frame = +2 Query: 260 IRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXXKE 415 +RIQRQ+ VL + LKVPP +NQFT+TLDK ++L++ + E E E Sbjct: 55 VRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVE 106 >10_08_0723 + 20111974-20112705 Length = 243 Score = 27.5 bits (58), Expect = 5.0 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -1 Query: 136 TTNGAAATFFPTFFLGFXCTILNSY 62 TTN AAA FF +GF +L SY Sbjct: 162 TTNAAAAPFFGGDSIGFVDVVLGSY 186 >06_03_1450 + 30246702-30247346,30248603-30248689,30248789-30248920, 30249016-30249162,30250375-30250440,30250519-30250629, 30251551-30251584,30251667-30251743,30251829-30251906 Length = 458 Score = 27.1 bits (57), Expect = 6.6 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 253 PVYPHPASEGCTXAXSESAPXDQPIYP 333 P YP P ++ A +AP QP YP Sbjct: 48 PTYPPPPADPPQYAPPPAAPQPQPYYP 74 >05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 Length = 160 Score = 26.6 bits (56), Expect = 8.7 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 136 SKRLSPRKL*ILS---LRRGQRTLLLVRAFSQLVTCPD 240 S L PR L +L RRG R L +VRA S V PD Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,510,519 Number of Sequences: 37544 Number of extensions: 160641 Number of successful extensions: 311 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 311 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 826450812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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