Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    79   1e-15
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    79   1e-15
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    52   2e-07
10_08_0723 + 20111974-20112705                                         27   5.0  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    27   6.6  
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033     27   8.7  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  K  + +RIQRQ+ +L + LKVPP +NQFT+TLDK  A  LFK+L KYRPE +A  
Sbjct: 44  LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAK 103

Query: 410 KERLXKAAE 436
           KERL K A+
Sbjct: 104 KERLLKRAQ 112



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
           NPLFEKRPK F IG  + P +DL RFV+WP +
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  K  + +RIQRQ+ +L + LKVPP +NQFT+TLDK  A  LFK+L KYRPE +A  
Sbjct: 28  LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAK 87

Query: 410 KERLXKAAE 436
           KERL K A+
Sbjct: 88  KERLLKRAQ 96



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
           NPLFEKRPK F IG  + P +DL RFV+WP +
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKRPK F IG  + P +DL RFVRWP
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 34/52 (65%)
 Frame = +2

Query: 260 IRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXXKE 415
           +RIQRQ+ VL + LKVPP +NQFT+TLDK       ++L++ + E E    E
Sbjct: 55  VRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVE 106


>10_08_0723 + 20111974-20112705
          Length = 243

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 136 TTNGAAATFFPTFFLGFXCTILNSY 62
           TTN AAA FF    +GF   +L SY
Sbjct: 162 TTNAAAAPFFGGDSIGFVDVVLGSY 186


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 253 PVYPHPASEGCTXAXSESAPXDQPIYP 333
           P YP P ++    A   +AP  QP YP
Sbjct: 48  PTYPPPPADPPQYAPPPAAPQPQPYYP 74


>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
          Length = 160

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 136 SKRLSPRKL*ILS---LRRGQRTLLLVRAFSQLVTCPD 240
           S  L PR L +L     RRG R L +VRA S  V  PD
Sbjct: 13  SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,510,519
Number of Sequences: 37544
Number of extensions: 160641
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)