Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...    85   3e-17
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...    85   3e-17
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...    85   3e-17
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...    85   3e-17
X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...    84   9e-17

>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  +  +YIR+QRQKAVL + LKVPP I+QF+QTLDKT A  LFK+LEKYRPE+    
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115

Query: 410 KERLXKAAE 436
           K RL K AE
Sbjct: 116 KLRLKKIAE 124



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           N LFEKRPKNF IGQ +QP RDLSRFVRWP
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  +  +YIR+QRQKAVL + LKVPP I+QF+QTLDKT A  LFK+LEKYRPE+    
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115

Query: 410 KERLXKAAE 436
           K RL K AE
Sbjct: 116 KLRLKKIAE 124



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           N LFEKRPKNF IGQ +QP RDLSRFVRWP
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  +  +YIR+QRQKAVL + LKVPP I+QF+QTLDKT A  LFK+LEKYRPE+    
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115

Query: 410 KERLXKAAE 436
           K RL K AE
Sbjct: 116 KLRLKKIAE 124



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           N LFEKRPKNF IGQ +QP RDLSRFVRWP
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 42/69 (60%), Positives = 51/69 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  +  +YIR+QRQKAVL + LKVPP I+QF+QTLDKT A  LFK+LEKYRPE+    
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115

Query: 410 KERLXKAAE 436
           K RL K AE
Sbjct: 116 KLRLKKIAE 124



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           N LFEKRPKNF IGQ +QP RDLSRFVRWP
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 41/69 (59%), Positives = 50/69 (72%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  +  +YIR+QRQKAVL + LKVPP I+QF+QTLDKT A  LFK+LEKYRPE+    
Sbjct: 56  LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAK 115

Query: 410 KERLXKAAE 436
             RL K AE
Sbjct: 116 NVRLKKIAE 124



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           N LFEKRPKNF IGQ +QP RDLSRFVRWP
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWP 63


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,542
Number of Sequences: 53049
Number of extensions: 252177
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)