Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    71   3e-13
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    71   3e-13
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    65   2e-11
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    54   6e-08
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    29   1.9  

>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           + +  K  +YIR+QRQ A+L + LKVPP INQF   LD   A   FK+L+KYRPE+    
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPESSEAK 214

Query: 410 KERLXKAAE 436
           K RL   AE
Sbjct: 215 KNRLRARAE 223



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           + +  K  +YIR+QRQ A+L + LKVPP INQF   LD   A   FK+L+KYRPE+    
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111

Query: 410 KERLXKAAE 436
           K RL   AE
Sbjct: 112 KNRLRARAE 120



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 30/61 (49%), Positives = 39/61 (63%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           + +  K  +YIR+QRQ A+L + LKVPP INQF   LD   A   FK+L+KYRPE+    
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT 111

Query: 410 K 412
           K
Sbjct: 112 K 112



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLD 343
           + +  K  +YIR+QRQ A+L + LKVPP INQF   LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 427 FXQPLFXGCFSLRPVFLQNLEKAXSXSLVQCLG 329
           F QP+   C +++P F+ N+EKA    L+  +G
Sbjct: 169 FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,897,029
Number of Sequences: 27780
Number of extensions: 130201
Number of successful extensions: 318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)