BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0797.Seq (436 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 71 3e-13 AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 71 3e-13 AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 65 2e-11 AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 54 6e-08 AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 29 1.9 >AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical protein Y73B3A.18a protein. Length = 234 Score = 71.3 bits (167), Expect = 3e-13 Identities = 34/69 (49%), Positives = 43/69 (62%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 + + K +YIR+QRQ A+L + LKVPP INQF LD A FK+L+KYRPE+ Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPESSEAK 214 Query: 410 KERLXKAAE 436 K RL AE Sbjct: 215 KNRLRARAE 223 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162 >AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform a protein. Length = 265 Score = 71.3 bits (167), Expect = 3e-13 Identities = 34/69 (49%), Positives = 43/69 (62%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 + + K +YIR+QRQ A+L + LKVPP INQF LD A FK+L+KYRPE+ Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111 Query: 410 KERLXKAAE 436 K RL AE Sbjct: 112 KNRLRARAE 120 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59 >AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform c protein. Length = 245 Score = 65.3 bits (152), Expect = 2e-11 Identities = 30/61 (49%), Positives = 39/61 (63%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 + + K +YIR+QRQ A+L + LKVPP INQF LD A FK+L+KYRPE+ Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT 111 Query: 410 K 412 K Sbjct: 112 K 112 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59 >AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical protein Y73B3A.18b protein. Length = 199 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162 Score = 46.0 bits (104), Expect = 1e-05 Identities = 20/38 (52%), Positives = 26/38 (68%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLD 343 + + K +YIR+QRQ A+L + LKVPP INQF LD Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192 >AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine receptor, class ab (class a-like) protein 6 protein. Length = 330 Score = 28.7 bits (61), Expect = 1.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 427 FXQPLFXGCFSLRPVFLQNLEKAXSXSLVQCLG 329 F QP+ C +++P F+ N+EKA L+ +G Sbjct: 169 FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,897,029 Number of Sequences: 27780 Number of extensions: 130201 Number of successful extensions: 318 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 309 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 318 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 735312162 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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