Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   4.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -1

Query: 205 PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 92
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -1

Query: 205 PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 92
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -1

Query: 205 PIAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGFXC--TILNSY*FSDL 47
           P+   +G F   GF       +LT       F  T F    C   IL  Y +S +
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQI 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,029
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)