Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0797.Seq
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            81   4e-16
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    79   1e-15
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m...    27   5.5  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  K  + IR+QRQK +L + LKVPP +NQFT+TLDK  A  LFK+L KYRPE +A  
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAK 102

Query: 410 KERLXKAAE 436
           KERL K A+
Sbjct: 103 KERLVKKAQ 111



 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFE+RPK F IG  + P +DLSR+++WP
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWP 50


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 39/69 (56%), Positives = 48/69 (69%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409
           L +  K  + IR+QRQK +L + LKVPP +NQFT+TLDK  A  LFKIL KYRPE +A  
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAK 101

Query: 410 KERLXKAAE 436
           KERL   A+
Sbjct: 102 KERLLNKAQ 110



 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFE+RPK F IG  + P +DLSR+++WP
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWP 49


>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
           melanogaster, EMBL:AE003739
          Length = 549

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 203 WSGHSANS*LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQ 325
           + GHS N+ L++   +A+++    +K      +K PP + +
Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,102
Number of Sequences: 28952
Number of extensions: 126117
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)