BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0797.Seq (436 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 81 4e-16 At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 79 1e-15 At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m... 27 5.5 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 80.6 bits (190), Expect = 4e-16 Identities = 39/69 (56%), Positives = 49/69 (71%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 L + K + IR+QRQK +L + LKVPP +NQFT+TLDK A LFK+L KYRPE +A Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAK 102 Query: 410 KERLXKAAE 436 KERL K A+ Sbjct: 103 KERLVKKAQ 111 Score = 50.4 bits (115), Expect = 5e-07 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFE+RPK F IG + P +DLSR+++WP Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWP 50 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 79.0 bits (186), Expect = 1e-15 Identities = 39/69 (56%), Positives = 48/69 (69%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQFTQTLDKTXAXGLFKILEKYRPETEAXX 409 L + K + IR+QRQK +L + LKVPP +NQFT+TLDK A LFKIL KYRPE +A Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAK 101 Query: 410 KERLXKAAE 436 KERL A+ Sbjct: 102 KERLLNKAQ 110 Score = 50.4 bits (115), Expect = 5e-07 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFE+RPK F IG + P +DLSR+++WP Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWP 49 >At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila melanogaster, EMBL:AE003739 Length = 549 Score = 27.1 bits (57), Expect = 5.5 Identities = 10/41 (24%), Positives = 22/41 (53%) Frame = +2 Query: 203 WSGHSANS*LVQICKMAQYIRIQRQKAVLXRXLKVPPXINQ 325 + GHS N+ L++ +A+++ +K +K PP + + Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,628,102 Number of Sequences: 28952 Number of extensions: 126117 Number of successful extensions: 239 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 236 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 239 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 683042040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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