Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.24 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.8  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 256 VYPHPASEGCTSASSESAPSDQPIYPDTG 342
           VYP+     C   + E++ SD P +P  G
Sbjct: 191 VYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 268  PASEGC-TSASSESAPSDQPIYPD 336
            P +  C   ASS  APS  P+ PD
Sbjct: 2279 PENTECHPDASSTMAPSTTPMVPD 2302


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 242 KSGQVTSWLNALTNSKVLWPLLE 174
           K G   + + A  +S V+WPL+E
Sbjct: 216 KMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 242 KSGQVTSWLNALTNSKVLWPLLE 174
           K G   + + A  +S V+WPL+E
Sbjct: 216 KMGLDIASITAQASSFVVWPLVE 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,019
Number of Sequences: 336
Number of extensions: 1767
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)