Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    70   1e-13
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   0.72 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.9  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   2.9  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   2.9  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   3.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   5.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.7  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    24   8.9  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    24   8.9  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    24   8.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 70.1 bits (164), Expect = 1e-13
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
           L +  K  +YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101



 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 26/49 (53%), Positives = 31/49 (63%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSISASSVRRLYFSVV*KCP 311
           NPLF  RP++F IGQ IQP RDLSRFV+WP       RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 152 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRL 301
           +E  E SL+EE ++ C W  H     +  +   A+ +++ R+   L  RL
Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 278 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 379
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 PVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 354
           P YP+ +S    SAS  S+P+     P T +  S
Sbjct: 314 PSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 257 TGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFDHQ 129
           TGP Y S Q     ++LTNS V    ++ER HN  G +    Q
Sbjct: 330 TGPLYHSPQ-----SSLTNSSVASADVQERTHNTNGASPIQDQ 367


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +2

Query: 155 ENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRLKVP 310
           +N   +L +  ++L YW G   +    ++ ++ QY+   R+ A+  +   +P
Sbjct: 84  KNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQPALIP 135


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 350 TAKGLFKILEKYR 388
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 379  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 278
            L+N ++ L  +L + L  +V++  H  TTL Y+L
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +2

Query: 152 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFT 331
           Q+N ++S++E+A E      HS NS   +    A    +   + ++ +RL + PP++QFT
Sbjct: 97  QQNSKNSIKEDANE------HSVNSAHSKSSSNASPESLNPSQ-MMSKRLSL-PPMSQFT 148

Query: 332 QT 337
            +
Sbjct: 149 DS 150


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 249 WPSISASSVRRLYFSVV*KCPLRSTNLP 332
           W ++S   VRR  F    K  + +TNLP
Sbjct: 625 WQNVSLQCVRRNKFMCALKNAIATTNLP 652


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -1

Query: 278 SDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLN 144
           S AG G+    + +GQ+  + N  ++ KV+ PL+   I +++GL+
Sbjct: 166 SFAGLGFLA-IFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGLS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,074
Number of Sequences: 5004
Number of extensions: 28345
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)