BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0796.Seq (437 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 70 1e-13 SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 28 0.72 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 2.9 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.9 SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 2.9 SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 3.9 SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 5.1 SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 6.7 SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 24 8.9 SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 24 8.9 SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 24 8.9 >SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 70.1 bits (164), Expect = 1e-13 Identities = 32/56 (57%), Positives = 41/56 (73%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397 L + K +YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET Sbjct: 46 LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101 Score = 56.0 bits (129), Expect = 2e-09 Identities = 26/49 (53%), Positives = 31/49 (63%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSISASSVRRLYFSVV*KCP 311 NPLF RP++F IGQ IQP RDLSRFV+WP RR ++ K P Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72 >SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces pombe|chr 3|||Manual Length = 296 Score = 27.9 bits (59), Expect = 0.72 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +2 Query: 152 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRL 301 +E E SL+EE ++ C W H + + A+ +++ R+ L RL Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.8 bits (54), Expect = 2.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 278 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 379 KAVL LK P IN F + L + +F++LE Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 2.9 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 253 PVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 354 P YP+ +S SAS S+P+ P T + S Sbjct: 314 PSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347 >SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 886 Score = 25.8 bits (54), Expect = 2.9 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -1 Query: 257 TGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFDHQ 129 TGP Y S Q ++LTNS V ++ER HN G + Q Sbjct: 330 TGPLYHSPQ-----SSLTNSSVASADVQERTHNTNGASPIQDQ 367 >SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizosaccharomyces pombe|chr 1|||Manual Length = 302 Score = 25.4 bits (53), Expect = 3.9 Identities = 11/52 (21%), Positives = 26/52 (50%) Frame = +2 Query: 155 ENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRLKVP 310 +N +L + ++L YW G + ++ ++ QY+ R+ A+ + +P Sbjct: 84 KNYAKALEQIDQQLLYWPGRQIHRCKQRLTRLTQYLLKARRLALKHQPALIP 135 >SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 25.0 bits (52), Expect = 5.1 Identities = 9/13 (69%), Positives = 13/13 (100%) Frame = +2 Query: 350 TAKGLFKILEKYR 388 TA+GL+K+LEKY+ Sbjct: 94 TAQGLYKMLEKYK 106 >SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 24.6 bits (51), Expect = 6.7 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 379 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 278 L+N ++ L +L + L +V++ H TTL Y+L Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723 >SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 24.2 bits (50), Expect = 8.9 Identities = 18/62 (29%), Positives = 34/62 (54%) Frame = +2 Query: 152 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFT 331 Q+N ++S++E+A E HS NS + A + + ++ +RL + PP++QFT Sbjct: 97 QQNSKNSIKEDANE------HSVNSAHSKSSSNASPESLNPSQ-MMSKRLSL-PPMSQFT 148 Query: 332 QT 337 + Sbjct: 149 DS 150 >SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pombe|chr 1|||Manual Length = 840 Score = 24.2 bits (50), Expect = 8.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 Query: 249 WPSISASSVRRLYFSVV*KCPLRSTNLP 332 W ++S VRR F K + +TNLP Sbjct: 625 WQNVSLQCVRRNKFMCALKNAIATTNLP 652 >SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 279 Score = 24.2 bits (50), Expect = 8.9 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = -1 Query: 278 SDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLN 144 S AG G+ + +GQ+ + N ++ KV+ PL+ I +++GL+ Sbjct: 166 SFAGLGFLA-IFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGLS 209 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,596,074 Number of Sequences: 5004 Number of extensions: 28345 Number of successful extensions: 92 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 92 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 158122380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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