Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0796.Seq
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 71 5e-13
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 71 5e-13
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 52 2e-07
07_03_1422 + 26462871-26463434,26463772-26463897 29 2.2
07_03_1414 - 26403361-26403969 29 2.2
07_03_1413 - 26396426-26396890 29 2.2
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 3.8
04_04_0188 - 23433753-23436572 28 3.8
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 5.0
01_05_0091 + 18048595-18050559 27 5.0
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049 27 6.6
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 27 6.6
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 27 6.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 70.5 bits (165), Expect = 5e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
NPLFEKRPK F IG + P +DL RFV+WP +
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 70.5 bits (165), Expect = 5e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
L + K + +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPSI 260
NPLFEKRPK F IG + P +DL RFV+WP +
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
NPLFEKRPK F IG + P +DL RFVRWP
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
Score = 51.2 bits (117), Expect = 4e-07
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +2
Query: 260 IRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
+RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 55 VRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 293 AEVQPSDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 135
A +P+ + P Y G+V + + +T + L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1414 - 26403361-26403969
Length = 202
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -1
Query: 293 AEVQPSDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 135
A +P+ + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1413 - 26396426-26396890
Length = 154
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 293 AEVQPSDAGCGYTGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 135
A +P+ + P Y G+V + + +T + L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 262 PHPASEGCTSASSESAPSDQP 324
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>04_04_0188 - 23433753-23436572
Length = 939
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 215 SANS*LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLD 343
SA + L Q+CK RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 136 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 240
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>01_05_0091 + 18048595-18050559
Length = 654
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 247 DGPV-YPHPASEGCTSASSESAPSD--QPIYPDTG 342
DGPV YPH A++ ASSESA D + I P TG
Sbjct: 465 DGPVDYPH-ANDPLLPASSESALDDKLKTIQPVTG 498
>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
Length = 444
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 253 PVYPHPASEGCTSASSESAPSDQPIYPDTGQD 348
P PHP+S+ SA+++ A ++ Y G+D
Sbjct: 121 PTRPHPSSDEAASAAAKVAVEEEDGYGVVGRD 152
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 253 PVYPHPASEGCTSASSESAPSDQPIYP 333
P YP P ++ A +AP QP YP
Sbjct: 48 PTYPPPPADPPQYAPPPAAPQPQPYYP 74
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 172 SSRRGQRTLLLVRAFSQL-VTCPDL*DGPVYPHPASEGCTSASSESAPSDQPIYPD 336
+SR R LLL+ A S L CP P PA+ ASS A D P+ D
Sbjct: 32 TSRSRSRALLLLPASSPLRAFCP----ASRRPSPATCSAAYASSSMATDDNPLLAD 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,000
Number of Sequences: 37544
Number of extensions: 202123
Number of successful extensions: 590
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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