Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   2e-13
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)                      27   6.8  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      27   6.8  
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   8.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/56 (55%), Positives = 43/56 (76%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
           L +  +  +Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPL EKRP+NF IG  IQP RDLSRFVRWP
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 286 TSASSESAPSDQPIYPDTG 342
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)
          Length = 378

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 236 QICKMAQYIRIQRQKAVLQRRLKVPPP 316
           ++C+  +Y R   ++ +L +R++ PPP
Sbjct: 216 RLCQTIEYARPSNKRPLLSQRMRSPPP 242


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 280  GCTSASSESAPSDQPIYPDTGQDYS 354
            GC  ++    PS+ P YP T + YS
Sbjct: 1229 GCRPSNDRVKPSEMPHYPKTTEKYS 1253


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 379 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLTLDADILGHLTNLDKSRVG 218
           LQ+L   + C L      ++    H  +T+   L  L + ++GHL +L  + +G
Sbjct: 134 LQHLTFTVICHLQHLKSTVIGHLQHLTSTVIGHLQHLTSTVIGHLQHLTSTVIG 187


>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -2

Query: 382 FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 278
           F+QNL   L CS ++  G+LV+++   QTTL  +L
Sbjct: 28  FIQNLSLFL-CSFLKEHGQLVEKKVDLQTTLLEAL 61


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 265 HPA-SEGCTSASSESAPSDQPIYPDT 339
           HP  S GC++ SS S  +  P+ PDT
Sbjct: 76  HPQLSSGCSTNSSSSQTAPFPVIPDT 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,259
Number of Sequences: 59808
Number of extensions: 219527
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)