BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0796.Seq (437 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 72 2e-13 AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 72 2e-13 AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 71 3e-13 AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 54 6e-08 AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 33 0.091 AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 31 0.37 U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 3.4 AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 3.4 AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 3.4 Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical p... 27 7.9 >AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform a protein. Length = 265 Score = 71.7 bits (168), Expect = 2e-13 Identities = 31/56 (55%), Positives = 42/56 (75%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397 + + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59 >AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7A, isoform c protein. Length = 245 Score = 71.7 bits (168), Expect = 2e-13 Identities = 31/56 (55%), Positives = 42/56 (75%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397 + + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59 >AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical protein Y73B3A.18a protein. Length = 234 Score = 71.3 bits (167), Expect = 3e-13 Identities = 31/56 (55%), Positives = 42/56 (75%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397 + + K +YIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162 >AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical protein Y73B3A.18b protein. Length = 199 Score = 53.6 bits (123), Expect = 6e-08 Identities = 21/30 (70%), Positives = 26/30 (86%) Frame = +3 Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254 NPLFEKR +NF IGQ IQP +D++RFV+WP Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162 Score = 50.8 bits (116), Expect = 4e-07 Identities = 22/38 (57%), Positives = 28/38 (73%) Frame = +2 Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLD 343 + + K +YIR+QRQ A+LQ+RLKVPP INQF LD Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192 >AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine receptor, class ab (class a-like) protein 6 protein. Length = 330 Score = 33.1 bits (72), Expect = 0.091 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = -2 Query: 427 FPQPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 320 F QP+ C +++P F+ N+EKA + C ++Q G+++ Sbjct: 169 FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205 >AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical protein ZC123.3 protein. Length = 1623 Score = 31.1 bits (67), Expect = 0.37 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 216 QPTRDLSRFVRWPSISASSVRRLYFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW--RNTG 389 Q +R +R RW S ++ S RR+ FS C RST+ PR RL W + G Sbjct: 441 QNSRIAARGARWRSEASRSCRRIPFST---CSTRSTSAPRVAIRLMRILLWVAWILKQGG 497 Query: 390 LRLKQPG 410 L Q G Sbjct: 498 LDFSQGG 504 >U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical protein F07F6.4 protein. Length = 529 Score = 27.9 bits (59), Expect = 3.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +3 Query: 312 LRSTNLPRHWTRLQLRA 362 +RSTNL +WT LQLRA Sbjct: 65 VRSTNLDTNWTWLQLRA 81 >AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical protein Y19D10A.9 protein. Length = 296 Score = 27.9 bits (59), Expect = 3.4 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +1 Query: 262 PHPASEGCTSASSESAPSDQPIYPDTG 342 P S G T PSD PIYP +G Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221 >AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical protein F56A4.2 protein. Length = 296 Score = 27.9 bits (59), Expect = 3.4 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +1 Query: 262 PHPASEGCTSASSESAPSDQPIYPDTG 342 P S G T PSD PIYP +G Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221 >Z68882-10|CAA93111.1| 397|Caenorhabditis elegans Hypothetical protein C47E12.7 protein. Length = 397 Score = 26.6 bits (56), Expect = 7.9 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +2 Query: 212 HSANS*LVQICKMAQYIRIQRQKAVLQRRL--KVPPPINQFTQTLDKTTAKGLF-KILEK 382 H ++ L+++CK Y+ + K +LQ L ++ IN FT +K F K L K Sbjct: 43 HFDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSEEEKVRFVACFLKSLSK 102 Query: 383 YRP 391 P Sbjct: 103 EWP 105 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,781,706 Number of Sequences: 27780 Number of extensions: 159700 Number of successful extensions: 434 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 434 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 745968860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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