Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    72   2e-13
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    72   2e-13
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    71   3e-13
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    54   6e-08
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    33   0.091
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    31   0.37 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    27   7.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
           + +  K  +YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
           + +  K  +YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 52  VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 397
           + +  K  +YIR+QRQ A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210



 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP 254
           NPLFEKR +NF IGQ IQP +D++RFV+WP
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLD 343
           + +  K  +YIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 33.1 bits (72), Expect = 0.091
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -2

Query: 427 FPQPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 320
           F QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 169 FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 216 QPTRDLSRFVRWPSISASSVRRLYFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW--RNTG 389
           Q +R  +R  RW S ++ S RR+ FS    C  RST+ PR   RL        W  +  G
Sbjct: 441 QNSRIAARGARWRSEASRSCRRIPFST---CSTRSTSAPRVAIRLMRILLWVAWILKQGG 497

Query: 390 LRLKQPG 410
           L   Q G
Sbjct: 498 LDFSQGG 504


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 312 LRSTNLPRHWTRLQLRA 362
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical
           protein Y19D10A.9 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 PHPASEGCTSASSESAPSDQPIYPDTG 342
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical
           protein F56A4.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 PHPASEGCTSASSESAPSDQPIYPDTG 342
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 212 HSANS*LVQICKMAQYIRIQRQKAVLQRRL--KVPPPINQFTQTLDKTTAKGLF-KILEK 382
           H  ++ L+++CK   Y+   + K +LQ  L  ++   IN FT   +K      F K L K
Sbjct: 43  HFDDADLMRLCKGLHYVMWMQDKMILQEELADRIGGLINIFTSEEEKVRFVACFLKSLSK 102

Query: 383 YRP 391
             P
Sbjct: 103 EWP 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,706
Number of Sequences: 27780
Number of extensions: 159700
Number of successful extensions: 434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)