Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 258 YWAILQIWTSHELAECPDQ*QSSLASSRREDSQFSWAQ 145
           YW I+Q   +HE        + ++AS R  ++Q + A+
Sbjct: 236 YWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAE 273


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 258 YWAILQIWTSHELAECPDQ*QSSLASSRREDSQFSWAQ 145
           YW I+Q   +HE        + ++AS R  ++Q + A+
Sbjct: 112 YWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAE 149


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 433 SSFPQPLFPGCFSLRPVFLQ 374
           + FPQ  FP C   R  FL+
Sbjct: 145 AKFPQEFFPECKWSRKGFLR 164


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 278 KAVLQRRLKVPPPINQFTQT 337
           +  L+ ++ VPP I QF+ T
Sbjct: 572 RGTLEVQVMVPPTIQQFSFT 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,504
Number of Sequences: 438
Number of extensions: 2079
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)