Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0796.Seq
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    72   1e-13
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            72   2e-13
At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila m...    28   3.2  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   3.2  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    26   9.7  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
           L +  K  + IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP-SISASSVRRL 284
           NPLFE+RPK F IG  + P +DLSR+++WP SI     +R+
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/55 (60%), Positives = 42/55 (76%)
 Frame = +2

Query: 230 LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 394
           L +  K  + IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 165 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWP-SISASSVRRL 284
           NPLFE+RPK F IG  + P +DLSR+++WP SI     +R+
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61


>At5g27390.1 68418.m03270 expressed protein CG6949 - Drosophila
           melanogaster, EMBL:AE003739
          Length = 549

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +2

Query: 203 WSGHSANS*LVQICKMAQYIRIQRQKAVLQRRLKVPPPINQ 325
           + GHS N+ L++   +A+++    +K     ++K PP + +
Sbjct: 312 YEGHSVNTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQK 352


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 421  QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 332
            QP  P CF L P  L  LE + +CS++  +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 280 GCTSASSESAPSDQPIYPDTGQDYS*GPFQDFGE 381
           GC +ASS S+ S+      TG D++   FQ + E
Sbjct: 154 GCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDE 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,529
Number of Sequences: 28952
Number of extensions: 155636
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)